RetrogeneDB ID:

retro_ggor_1812

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:2b:111460315..111460897(-)
Located in intron of:ENSGGOG00000017048
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ENSG00000111704
Ensembl ID:ENSGGOG00000028196
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_1812
ATGAGTGTGAATCCAGCTTGTCCCCAAACCTGCCTGGCTTCAAAGCATCTGATTGTAAAGAATCTTCACCTATGCCTGTC
ATTTGTGGGCCTGAAGAAAACTATCCATCCTTGCAAATGTCTCCTGCTGAGATGCCTCACACTGAGACTGTCTCTCCTCT
TCCTTCCTCCATGGATCTGCATATTCAGGATAGTCCTGATTCTCCTACCCGTCCCAAAGGCAAACAGCCCACTGCTGCAG
AGAATAGCGCCACAAAAGAAGGAAGACAAGGTCCCGGTCAAGAAACAGAAGACCAGAACTGTGTTCTCTTCCACCCAGCT
GTGTGTACTCAATGATAGATTTCAGAGACAGAAATACCTCAGCCTTCAACAGATGCAAGAACTTTCCAATATCCTGAACC
TTAGCTACAAACAGGTGAAGACCTGGTTCCAGAACCAGAGAATGAAATCTAAGAGGTGGCAGAAAAACAACTGGCCACAG
AATAGCAATGGTGTGACTCAGGCCTCAGCACCTACCTACCCCAGCCTCTACTCTTCTTACCACCAGGAATGCCTGGTGAA
CACGACTGGAAACCTTCCAATG

ORF - retro_ggor_1812 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.37 %
Parental protein coverage: 63.93 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMSVDPACPQS-LPCFEASDCKESSPMPVICGPEENYPSLQMSSAEIPHTETVSPLPSSMDLPIQDSPDSS
MSV.PACPQ..LP.F.ASDCKESSPMPVICGPEENYPSLQMS.AE.PHTETVSPLPSSMDL.IQDSPDS.
RetrocopyMSVNPACPQT<LPGFKASDCKESSPMPVICGPEENYPSLQMSPAEMPHTETVSPLPSSMDLHIQDSPDSP
ParentalTSPKGKQPTSAEKSAT-KKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQ
T.PKGKQPT.AE.SAT.KKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQ
RetrocopyTRPKGKQPTAAENSAT>KKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQ
ParentalVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSSYHQGCLVNPTGNLPM
VKTWFQNQRMKSKRWQKNNWP.NSNGVTQ.ASAPTYPSLYSSYHQ.CLVN.TGNLPM
RetrocopyVKTWFQNQRMKSKRWQKNNWPQNSNGVTQ-ASAPTYPSLYSSYHQECLVNTTGNLPM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .05 RPM 0 .48 RPM
SRP007412_cerebellum 0 .00 RPM 0 .08 RPM
SRP007412_heart 0 .00 RPM 0 .09 RPM
SRP007412_kidney 0 .00 RPM 0 .45 RPM
SRP007412_liver 0 .00 RPM 0 .13 RPM
SRP007412_testis 0 .00 RPM 0 .41 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1812 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_1812 has 1 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Pan troglodytes retro_ptro_1746

Parental genes homology:
Parental genes homology involve 22 parental genes, and 59 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000170641 retrocopy
Canis familiaris ENSCAFG000000139141 retrocopy
Choloepus hoffmanni ENSCHOG000000009724 retrocopies
Cavia porcellus ENSCPOG000000026211 retrocopy
Echinops telfairi ENSETEG000000046488 retrocopies
Felis catus ENSFCAG000000016211 retrocopy
Homo sapiens ENSG000001117045 retrocopies
Gorilla gorilla ENSGGOG00000028196 4 retrocopies
Macropus eugenii ENSMEUG000000099492 retrocopies
Microcebus murinus ENSMICG000000022281 retrocopy
Myotis lucifugus ENSMLUG000000293252 retrocopies
Myotis lucifugus ENSMLUG000000305801 retrocopy
Macaca mulatta ENSMMUG000000321584 retrocopies
Monodelphis domestica ENSMODG000000179792 retrocopies
Mustela putorius furoENSMPUG000000167315 retrocopies
Nomascus leucogenys ENSNLEG000000053593 retrocopies
Oryctolagus cuniculus ENSOCUG000000137831 retrocopy
Otolemur garnettii ENSOGAG000000263391 retrocopy
Procavia capensis ENSPCAG000000154602 retrocopies
Pongo abelii ENSPPYG000000042335 retrocopies
Pan troglodytes ENSPTRG000000298074 retrocopies
Pteropus vampyrus ENSPVAG000000069891 retrocopy



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