RetrogeneDB ID: | retro_pabe_3142 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7:55126031..55126615(-) | ||
Located in intron of: | ENSPPYG00000017686 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000004233 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.78 % |
Parental protein coverage: | 63.93 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MSVDPACPQSLPCFEASDCKESSPMPMICGPEENHPSLQMSSAEMPHTETVSPL-PSSMDLLIQDSPDSS |
MSVD.AC.QSLPCFEASDCK.SSPMP.ICGPEEN.PSLQ.SSAEMPH.ETVS.L..SSM.LLIQ.SPDSS | |
Retrocopy | MSVDLACLQSLPCFEASDCK*SSPMPVICGPEENYPSLQISSAEMPHMETVSSL<SSSMNLLIQYSPDSS |
Parental | TSPKGKQPTAAENSATKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQV |
TSPKGKQPTAAENSA.KK.DKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNI.NLSYKQV | |
Retrocopy | TSPKGKQPTAAENSAPKKGDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNIWNLSYKQV |
Parental | KTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSSYHQGCLVNPTGNLPM |
KTWF.NQRMKSKRWQKNNWPKNSNGVT.KASAPTYPS.YSSYHQG.LVN.TG.LP. | |
Retrocopy | KTWF*NQRMKSKRWQKNNWPKNSNGVTRKASAPTYPSHYSSYHQG*LVNLTGKLPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .49 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .07 RPM | 0 .00 RPM |
SRP007412_liver | 0 .15 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3713 |
Pan troglodytes | retro_ptro_2514 |
Gorilla gorilla | retro_ggor_2510 |