RetrogeneDB ID: | retro_pabe_3440 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 9:95981811..95982537(+) | ||
Located in intron of: | ENSPPYG00000019445 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000004233 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.23 % |
Parental protein coverage: | 79.34 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | DSPDSSTSPKGKQPTAAENSATKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILN |
DS..S.TSPKG.Q.T.AE.S..KKEDKV.VKKQ.TRTVFSSTQLCVL.DRFQRQKYLSLQQMQEL..ILN | |
Retrocopy | DSLNSFTSPKGRQLTSAEKSTAKKEDKVLVKKQTTRTVFSSTQLCVLSDRFQRQKYLSLQQMQELYSILN |
Parental | LSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSSYHQGCLVNPTGNLPMWSNQTWSN |
LSYKQVKTWF.NQR.K.KRWQKN..PK.SNGVT.KA.APTYPSLYS...QGCL.N..GNL.M.SNQT.S. | |
Retrocopy | LSYKQVKTWF*NQRIKYKRWQKNSCPKDSNGVTPKA*APTYPSLYSPCPQGCLANTSGNLSMRSNQTCSS |
Parental | SSWSNQTQNIQSWSNHS-WNTQTWCTQSWNNQAWNSPFYNCGEESLQ-SCMQFQPNSPASDLEAALEAAG |
S.W.NQT.NIQS...HS..NTQTWCTQSWN..AWN.PFY..GEESLQ.SCMQFQ.NS..SDLEAALE.A. | |
Retrocopy | SAWGNQTWNIQS*NSHS<LNTQTWCTQSWNSEAWNNPFYSYGEESLQ>SCMQFQQNSFLSDLEAALETAE |
Parental | EGLNVIQQTARYFSTPQTMDLFLNYSTNMQPEDM |
E..N.IQQT.RYFSTPQT.DL.LNYS.NMQPEDM | |
Retrocopy | ESYNGIQQTTRYFSTPQTIDLLLNYSKNMQPEDM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .03 RPM | 0 .00 RPM |
SRP007412_liver | 0 .03 RPM | 0 .00 RPM |