RetrogeneDB ID: | retro_cpor_1033 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_4:20913979..20914389(-) | ||
Located in intron of: | ENSCPOG00000007844 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4E | ||
Ensembl ID: | ENSCPOG00000005383 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.05 % |
Parental protein coverage: | 63.13 % |
Number of stop codons detected: | 9 |
Number of frameshifts detected | 3 |
Parental | MATVEPETTPTPNPPPAEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQ-ANLRLISKFDTV |
..TVEPET.PTPN.PPAEE.K.ES..EVANPE.YIKHPLQ.R.ALWF.KNDK.KTWQ..NL.LISKFDTV | |
Retrocopy | ITTVEPETAPTPNLPPAEE-KAESD*EVANPEYYIKHPLQKR*ALWFLKNDKNKTWQ<RNL*LISKFDTV |
Parental | EDFWAL-YNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRG-GRWLITLNKQ-QRRSDLDRFWLETLLC |
EDFWAL....I.L.SNLMP.CDYS.FKD.IEPM.EDEKN..G.G.WLITLNKQ....SDLD.F.LETL.C | |
Retrocopy | EDFWAL<IHPI*LFSNLMPSCDYSTFKDSIEPM*EDEKNRQG>G*WLITLNKQ*SQ*SDLDCF*LETLSC |
Parental | L |
. | |
Retrocopy | I |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 38 .08 RPM |
SRP017611_kidney | 0 .00 RPM | 29 .00 RPM |
SRP017611_liver | 0 .00 RPM | 24 .24 RPM |
SRP040447_lung | 0 .00 RPM | 25 .83 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 20 .83 RPM |