RetrogeneDB ID: | retro_ocun_596 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 13:14313352..14313978(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4E | ||
Ensembl ID: | ENSOCUG00000001456 | ||
Aliases: | EIF4E, EIF-4E | ||
Description: | Eukaryotic translation initiation factor 4E [Source:UniProtKB/Swiss-Prot;Acc:P29338] |
Percent Identity: | 84.76 % |
Parental protein coverage: | 81.57 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | ETTPTPNPPPAEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALY |
ET.PT.NP.P.EEEKTESN.E.AN.EHYIKHP.QNRW..WFFKND.SKTWQ.NL.LISKFDTV.DFWAL. | |
Retrocopy | ETAPTRNPLPTEEEKTESN*EIANAEHYIKHPWQNRWVFWFFKNDRSKTWQENLWLISKFDTVADFWAL* |
Parental | NHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITL-NKQQRR-SDLDRFWLETLLCLIGESFDD |
NHI.LSSN...GCDYSLFKDGIEPMWEDEKNK.GGRWLI....KQQ.R..DL.RFWLETLL.LIGESFDD | |
Retrocopy | NHI*LSSN*IAGCDYSLFKDGIEPMWEDEKNKWGGRWLIIK<TKQQQR*CDLNRFWLETLLYLIGESFDD |
Parental | YSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNR |
YSDDVCGAVVNVRAKGDK.AIWTTEC.NRDAVTHIGRV.KERLGLPPKIVIGYQSHADTATKSGSTTKNR | |
Retrocopy | YSDDVCGAVVNVRAKGDKVAIWTTECGNRDAVTHIGRVFKERLGLPPKIVIGYQSHADTATKSGSTTKNR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 29 .31 RPM |
SRP017611_kidney | 0 .00 RPM | 27 .26 RPM |
SRP017611_liver | 0 .00 RPM | 5 .55 RPM |