RetrogeneDB ID: | retro_rnor_1854 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:178290326..178290964(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Eif4e | ||
Ensembl ID: | ENSRNOG00000013183 | ||
Aliases: | None | ||
Description: | Eukaryotic translation initiation factor 4E [Source:UniProtKB/Swiss-Prot;Acc:P63074] |
Percent Identity: | 80.18 % |
Parental protein coverage: | 99.54 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 6 |
Parental | ATVEPETT-PTTNP-PPAEEEKT-ESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDT |
ATVEPETT.PTTNP.PP..EE....SNQE.ANP..YI.H.LQNRW..W.FKNDK.K.WQANLRLISK.DT | |
Retrocopy | ATVEPETT<PTTNP<PPV-EEEN<QSNQELANPGRYINHHLQNRWVQWIFKNDKNKSWQANLRLISKCDT |
Parental | V-EDFWALYNHIQLSSNLMPGCDYSL-FKDGIEPMWEDE-KNKRGGRWLITLNKQQRRSDLDRFWLETLL |
V.EDFWAL.NHIQLSSNLMPGCD.SL.FK..IEPMWEDE.K.K.GGRWLI.LN.QQRRSDLD.FWLET.L | |
Retrocopy | V<EDFWALCNHIQLSSNLMPGCDSSL<FKGVIEPMWEDE>KTK-GGRWLIILNEQQRRSDLDCFWLET*L |
Parental | CLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTAT |
CLIGES.DD.SDDVCGAVV.VRAK...I.IWTT.CENRDAVTHIGRV.KERLGLPPK.VIGYQSHADTAT | |
Retrocopy | CLIGESSDDHSDDVCGAVVSVRAKSAMITIWTTGCENRDAVTHIGRVHKERLGLPPKTVIGYQSHADTAT |
Parental | KSGSTTKNRFVV |
KSGS.TKNRFV. | |
Retrocopy | KSGSSTKNRFVI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 52 .84 RPM |
SRP017611_kidney | 0 .00 RPM | 45 .15 RPM |
SRP017611_liver | 0 .00 RPM | 19 .70 RPM |