RetrogeneDB ID: | retro_ggor_2005 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 3:183735160..183735693(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000022832 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4E | ||
Ensembl ID: | ENSGGOG00000004718 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.71 % |
Parental protein coverage: | 98.33 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | IDVETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSK-TWQANLRLISKFDTV-ED |
...ETTPT.NP.TTEEEKTES.QEVANPEHYIKH.LQNRWALWFFKN.KSK.TWQANL.LISKFDTV.ED | |
Retrocopy | VEQETTPTSNPVTTEEEKTESIQEVANPEHYIKHHLQNRWALWFFKNGKSK>TWQANLWLISKFDTV>ED |
Parental | FWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGES |
FWALYNHIQLSSNLMPGCDY.LFK.GI.PMWEDEKNK.GGRWLITLNK.QR.SDLD.FWLETLLCLI.ES | |
Retrocopy | FWALYNHIQLSSNLMPGCDY*LFKGGIDPMWEDEKNKLGGRWLITLNK*QR*SDLDCFWLETLLCLIAES |
Parental | FDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIG |
FDDYS.DVCGAV.NVRAKGDKIAIWTTECENREAVTH.G | |
Retrocopy | FDDYSNDVCGAVINVRAKGDKIAIWTTECENREAVTHMG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .91 RPM | 11 .56 RPM |
SRP007412_cerebellum | 0 .28 RPM | 5 .91 RPM |
SRP007412_heart | 0 .16 RPM | 2 .13 RPM |
SRP007412_kidney | 0 .82 RPM | 6 .79 RPM |
SRP007412_liver | 0 .21 RPM | 3 .22 RPM |
SRP007412_testis | 1 .35 RPM | 19 .79 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2894 |
Pan troglodytes | retro_ptro_1957 |
Pongo abelii | retro_pabe_2396 |
Macaca mulatta | retro_mmul_1451 |