RetrogeneDB ID: | retro_cpor_1480 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_9:43469035..43469516(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4E | ||
Ensembl ID: | ENSCPOG00000005383 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.39 % |
Parental protein coverage: | 74.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MATVEPETTPTPNPPPAEEEKTESNQE-VANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTV |
M...EP...PTPNPPP.EEEKTESN...VANPEHYIKHPLQN.WALWF.KNDKS..WQ.NL.LI.KFDTV | |
Retrocopy | MVNLEPKNNPTPNPPPVEEEKTESNMG<VANPEHYIKHPLQNIWALWFLKNDKSNIWQGNLQLIFKFDTV |
Parental | ED-FWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLI |
ED.F..LYN.IQ.SS.L.PG..YSLFK...EPMWE.EK.K.GG.WLI.L.K.QR.SD.D.F.LETLLCLI | |
Retrocopy | ED<FEDLYNYIQFSSSLTPGYEYSLFKECVEPMWEEEKDKWGG*WLIKLSKPQRQSDPDCFQLETLLCLI |
Parental | GESFDDYSDDVCGAVVNVRAKGD |
GESFD.YSD..CG.V.NVRAKGD | |
Retrocopy | GESFDNYSDYMCGVVFNVRAKGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 38 .08 RPM |
SRP017611_kidney | 0 .00 RPM | 29 .00 RPM |
SRP017611_liver | 0 .00 RPM | 24 .24 RPM |
SRP040447_lung | 0 .00 RPM | 25 .83 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 20 .83 RPM |