RetrogeneDB ID: | retro_mmul_601 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 10:38842615..38843245(+) | ||
Located in intron of: | ENSMMUG00000001809 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.12885 | ||
Ensembl ID: | ENSMMUG00000011066 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4E [Source:RefSeq peptide;Acc:NP_001253148] |
Percent Identity: | 84.19 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | ETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFF-KNDKSKTWQANLRLISKFDTVEDFWAL |
ETTPTPNPP..EEEKTESNQEVANPEHYIKHPLQNR.ALWFF.KNDKSKTWQA.L.LISKFD.VEDF.AL | |
Retrocopy | ETTPTPNPPV-EEEKTESNQEVANPEHYIKHPLQNRRALWFF>KNDKSKTWQAHLPLISKFDLVEDFRAL |
Parental | YNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLI-TLNKQQRRSDLDRFWLETLLCLIGESFDD |
YNHI.LSSNLMP.CDYSLFKDGIEPMWED.KNKR.G.WLI.TLNKQQR..DLD.FWLETLL.LIGESF.D | |
Retrocopy | YNHI*LSSNLMPVCDYSLFKDGIEPMWEDKKNKRSG*WLI>TLNKQQRQRDLDHFWLETLLGLIGESFND |
Parental | YSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHI-GRVYKERLGLPPKIVIGYQSHADTATK-SGSTTK |
.SDDVC.AVVNVRAKGDK.A.WTTECENREA.TH..GRVYKERLGLPP.IV.GYQSH.D.ATK...S.TK | |
Retrocopy | *SDDVCKAVVNVRAKGDKTAVWTTECENREALTHL<GRVYKERLGLPPNIVTGYQSHPDIATK<NSSATK |
Parental | NRFVV |
NRFVV | |
Retrocopy | NRFVV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .34 RPM | 23 .19 RPM |
SRP007412_brain_prefrontal_cortex | 0 .32 RPM | 22 .45 RPM |
SRP007412_cerebellum | 0 .71 RPM | 24 .80 RPM |
SRP007412_heart | 0 .53 RPM | 19 .31 RPM |
SRP007412_kidney | 0 .47 RPM | 21 .01 RPM |
SRP007412_liver | 0 .79 RPM | 9 .94 RPM |
SRP007412_testis | 0 .38 RPM | 132 .49 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_1774 |