RetrogeneDB ID: | retro_ggor_2160 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 5:34641638..34642160(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4E | ||
Ensembl ID: | ENSGGOG00000004718 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.85 % |
Parental protein coverage: | 96.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALY |
ETTPTPNPPTT.EEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALY | |
Retrocopy | ETTPTPNPPTTGEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALY |
Parental | NHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYS |
NHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGE.FDDYS | |
Retrocopy | NHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGEFFDDYS |
Parental | DDVCGAVVNVRAKGDKIAIWTTECENREAVTHIG |
DDVCGAVVNVRAKGDKIAIWTTECENREAVTHIG | |
Retrocopy | DDVCGAVVNVRAKGDKIAIWTTECENREAVTHIG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 1 .63 RPM | 11 .56 RPM |
SRP007412_cerebellum | 0 .67 RPM | 5 .91 RPM |
SRP007412_heart | 0 .28 RPM | 2 .13 RPM |
SRP007412_kidney | 1 .88 RPM | 6 .79 RPM |
SRP007412_liver | 0 .61 RPM | 3 .22 RPM |
SRP007412_testis | 3 .63 RPM | 19 .79 RPM |