Parental gene:

EIF4E, ENSCPOG00000005383

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_22:26830675..26872743(-)


>ENSCPOG00000005383
ATGGCGACTGTGGAACCGGAAACCACCCCTACTCCTAATCCCCCACCTGCAGAAGAGGAGAAAACAGAATCTAATCAGGA
GGTTGCTAACCCAGAACACTATATTAAACATCCTCTTCAGAACAGATGGGCACTCTGGTTTTTCAAAAATGATAAAAGTA
AAACTTGGCAAGCAAACCTTCGACTGATCTCTAAGTTTGATACTGTTGAAGACTTTTGGGCTCTGTACAACCATATCCAG
TTGTCTAGTAATTTAATGCCTGGCTGCGACTACTCACTTTTTAAGGATGGTATTGAGCCTATGTGGGAAGATGAGAAAAA
CAAACGGGGAGGACGATGGCTAATCACACTGAACAAACAGCAGAGACGAAGTGACCTAGATCGCTTTTGGCTAGAAACAC
TGCTGTGCCTTATTGGAGAATCATTTGATGACTACAGTGATGATGTTTGTGGAGCTGTTGTTAATGTTAGAGCTAAAGGT
GATAAGATAGCAATATGGACTACTGAATGTGAAAACAGAGAGGCTGTTCAACATATAGGGAGAGTGTACAAGGAAAGGTT
AGGACTTCCTCCAAAGATAGTGATTGGTTATCAGTCCCATGCTGACACAGCTACTAAGAGCGGCTCCACCACTAAAAATA
GGTTTGTTGTT

Library Parental gene expression (RPM)
SRP017611_liver 24 .24 RPM
SRP017611_kidney 29 .00 RPM
SRP017611_brain 38 .08 RPM
SRP040447_lung 25 .83 RPM
SRP040447_skeletal_muscle 20 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000009450 ortholog_one2one 9 retrogenes
retro_chof_1177, retro_chof_1219, retro_chof_124, retro_chof_1319, retro_chof_1551, retro_chof_200, retro_chof_604, retro_chof_918, retro_chof_992,
Callithrix jacchus ENSCJAG00000007151 ortholog_one2one 2 retrogenes
retro_cjac_1373, retro_cjac_2097,
Dasypus novemcinctus ENSDNOG00000013712 ortholog_one2one 5 retrogenes
retro_dnov_1722, retro_dnov_2378, retro_dnov_2570, retro_dnov_353, retro_dnov_638,
Echinops telfairi ENSETEG00000007347 ortholog_one2one 3 retrogenes
retro_etel_1285, retro_etel_1449, retro_etel_499,
Homo sapiens ENSG00000151247 ortholog_one2one 4 retrogenes
retro_hsap_1843, retro_hsap_2409, retro_hsap_2894, retro_hsap_3935,
Gorilla gorilla ENSGGOG00000004718 ortholog_one2one 3 retrogenes
retro_ggor_1497, retro_ggor_2005, retro_ggor_2160,
Macropus eugenii ENSMEUG00000011104 ortholog_one2one 3 retrogenes
retro_meug_2087, retro_meug_2114, retro_meug_428,
Microcebus murinus ENSMICG00000001482 ortholog_one2one 1 retrogene
retro_mmur_1195,
Myotis lucifugus ENSMLUG00000005035 possible_ortholog 3 retrogenes
retro_mluc_1519, retro_mluc_24, retro_mluc_474,
Macaca mulatta ENSMMUG00000011066 ortholog_one2one 2 retrogenes
retro_mmul_1451, retro_mmul_601,
Monodelphis domestica ENSMODG00000020716 ortholog_one2one 1 retrogene
retro_mdom_701,
Mustela putorius furo ENSMPUG00000002041 possible_ortholog 1 retrogene
retro_mputfur_37,
Mus musculus ENSMUSG00000028156 ortholog_one2one 6 retrogenes
retro_mmus_1059, retro_mmus_1478, retro_mmus_1872, retro_mmus_2362, retro_mmus_3462, retro_mmus_868,
Oryctolagus cuniculus ENSOCUG00000001456 ortholog_one2one 3 retrogenes
retro_ocun_1760, retro_ocun_596, retro_ocun_810,
Otolemur garnettii ENSOGAG00000001131 possible_ortholog 1 retrogene
retro_ogar_259,
Pongo abelii ENSPPYG00000014944 ortholog_one2one 3 retrogenes
retro_pabe_1774, retro_pabe_2396, retro_pabe_3244,
Pan troglodytes ENSPTRG00000016301 ortholog_one2one 4 retrogenes
retro_ptro_1159, retro_ptro_1386, retro_ptro_1957, retro_ptro_2672,
Rattus norvegicus ENSRNOG00000013183 ortholog_one2one 11 retrogenes
retro_rnor_1437, retro_rnor_1534, retro_rnor_1544, retro_rnor_1545, retro_rnor_1853, retro_rnor_1854, retro_rnor_2017, retro_rnor_2159, retro_rnor_653, retro_rnor_781, retro_rnor_783,
Sorex araneus ENSSARG00000007821 ortholog_one2one 1 retrogene
retro_sara_285,
Ictidomys tridecemlineatus ENSSTOG00000002230 ortholog_one2one 5 retrogenes
retro_itri_1548, retro_itri_1549, retro_itri_1818, retro_itri_1819, retro_itri_1863,
Tarsius syrichta ENSTSYG00000010862 ortholog_one2one 3 retrogenes
retro_tsyr_1077, retro_tsyr_1442, retro_tsyr_2169,
Drosophila melanogaster FBgn0035709 ortholog_many2many 1 retrogene
retro_dmel_68,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_169 88.97 62.21
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2. retro_cpor_501 60.94 57.14
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3. retro_cpor_1033 73.05 63.13
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4. retro_cpor_1480 72.39 74.19
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Download FASTA sequences of all ENSCPOG00000005383 retrocopies