RetrogeneDB ID: | retro_rnor_783 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 11:16992385..16993031(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000031600 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Eif4e | ||
Ensembl ID: | ENSRNOG00000013183 | ||
Aliases: | None | ||
Description: | Eukaryotic translation initiation factor 4E [Source:UniProtKB/Swiss-Prot;Acc:P63074] |
Percent Identity: | 84.09 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MATVEPETTPTTNPPPAEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKF-DTV |
....EPETTPTTNPPPAEEEK.ES.QEVA.PEHYIKHPLQNRWA.WFFKNDKSKTWQANLRLISKF.D.V | |
Retrocopy | VSIAEPETTPTTNPPPAEEEKPESDQEVASPEHYIKHPLQNRWAHWFFKNDKSKTWQANLRLISKF>DNV |
Parental | EDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIG |
EDFWAL.NHIQLSSNLM.GCDYSLFKDGI.PMWED.KNKRGGRWLITLNKQQRRSDL.RFWLETLL.LIG | |
Retrocopy | EDFWALHNHIQLSSNLMSGCDYSLFKDGIKPMWEDKKNKRGGRWLITLNKQQRRSDLGRFWLETLLGLIG |
Parental | ESFDDYSDDVCGAVVNVRAKGDKI-AIWTTECENRDAVTHIGRVYKE-RLGLPPKIVIGYQSHADTATKS |
ESFDDYSDDVC.AVV.V....D.I...WTTE.ENRDAV.H.GRVYKE..LGLPPKIVIGY.SHA.TA.KS | |
Retrocopy | ESFDDYSDDVCEAVVGV--RPDNI>SVWTTEYENRDAVPHVGRVYKE<KLGLPPKIVIGYRSHANTASKS |
Parental | GSTTKNRFVV |
.STTKNRFVV | |
Retrocopy | SSTTKNRFVV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 52 .84 RPM |
SRP017611_kidney | 0 .00 RPM | 45 .15 RPM |
SRP017611_liver | 0 .00 RPM | 19 .70 RPM |