RetrogeneDB ID: | retro_rnor_2017 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:223336802..223337179(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Eif4e | ||
Ensembl ID: | ENSRNOG00000013183 | ||
Aliases: | None | ||
Description: | Eukaryotic translation initiation factor 4E [Source:UniProtKB/Swiss-Prot;Acc:P63074] |
Percent Identity: | 67.18 % |
Parental protein coverage: | 59.45 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | CDYSLFKDGIEPMW-EDEKNKRGGR-WLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNV |
CDYSLFKDGI.P.W.EDE.N.R..R.WLITL.KQQ..SDL....L..LL.L.GES....SD..CGAVVNV | |
Retrocopy | CDYSLFKDGI*PVW<EDEENSR**R*WLITLIKQQGGSDLNHVSLGILLFLFGES----SDVLCGAVVNV |
Parental | RAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV |
.AK..KIAI.TTECENRDA.THIGRV.KE.L.LP.KI.I..Q.H..TATKS.STTK.R.VV | |
Retrocopy | KAKDEKIAI*TTECENRDAITHIGRVCKEKLELPLKIAINDQTHVNTATKSSSTTKIRLVV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 52 .84 RPM |
SRP017611_kidney | 0 .00 RPM | 45 .15 RPM |
SRP017611_liver | 0 .00 RPM | 19 .70 RPM |