RetrogeneDB ID: | retro_cpor_501 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_17:29604384..29604752(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4E | ||
Ensembl ID: | ENSCPOG00000005383 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.94 % |
Parental protein coverage: | 57.14 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | WQANLRLISKFDTVEDFWALYNHIQLS-SNLMPGCDYSLFKDGIEPMWEDEKNKR-GGRWLITLNK-QQR |
W.ANLRLI.K.DT.EDF.A....IQLS..N....CD.SLF...IEPMWED.K.KR.GG.WLITLNK..QR | |
Retrocopy | WEANLRLICKLDTAEDF*APHSPIQLS<CNVIRSCDPSLFRHSIEPMWEDKKDKR<GGQWLITLNK<EQR |
Parental | RSDLDRFWLETLLCLIGESFDD-YSDDVCGAVVNVRAKGDKIAIWTTECENREAVQHI |
.SDL..F.L.TL.CL.GE...D....DV.GA..NVRAKG.KIA....ECE.REA.QH. | |
Retrocopy | QSDLSCFCLQTLRCLVGEYPGD<FQNDV*GAAANVRAKGNKIAV*RAECEDREALQHL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 38 .08 RPM |
SRP017611_kidney | 0 .00 RPM | 29 .00 RPM |
SRP017611_liver | 0 .00 RPM | 24 .24 RPM |
SRP040447_lung | 0 .00 RPM | 25 .83 RPM |
SRP040447_skeletal_muscle | 0 .04 RPM | 20 .83 RPM |