RetrogeneDB ID: | retro_itri_1082 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393371.1:5823921..5824160(+) | ||
Located in intron of: | ENSSTOG00000011617 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF1 | ||
Ensembl ID: | ENSSTOG00000002719 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:3249] |
Percent Identity: | 70.37 % |
Parental protein coverage: | 69.91 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | IQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHP-EYGEVIQLQGDQRKNICQFLV-EIGL |
IQQR.GRK...TVQGIADDYD.K.LVKAFKKK...N.T.IEHP.......QLQGDQ.K.I.QFLV.EIGL | |
Retrocopy | IQQRSGRKIISTVQGIADDYDEK*LVKAFKKKLPSNCTIIEHP>KMXXXXQLQGDQHKDISQFLV>EIGL |
Parental | AKDDQLKVHGF |
.KD.QLKVHGF | |
Retrocopy | GKDNQLKVHGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |