RetrogeneDB ID: | retro_itri_702 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393312.1:13161636..13161966(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF1 | ||
Ensembl ID: | ENSSTOG00000002719 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:3249] |
Percent Identity: | 74.55 % |
Parental protein coverage: | 97.35 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | IQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTV |
......FDPFADASKG.DLLPA.TED.IHI.IQQRN..KT.TTVQG.A.DYD.KK..K.F.KKFACN.TV | |
Retrocopy | VSRTSTFDPFADASKGYDLLPASTED*IHIIIQQRNIWKTFTTVQGVAGDYD*KKRMKVFRKKFACNSTV |
Parental | IEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF |
IEHPEYGEVIQLQGDQ.KN...FLVE.GLAK..QLKVHGF | |
Retrocopy | IEHPEYGEVIQLQGDQCKNMPVFLVETGLAKGNQLKVHGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |