RetrogeneDB ID:

retro_pvam_471

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_3313:142654..142993(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:EIF1
Ensembl ID:ENSPVAG00000010629
Aliases:None
Description:eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:3249]


Retrocopy-Parental alignment summary:






>retro_pvam_471
ATGTCCACTATCCAGAACCTCCACTCTTTCGACCCCTTTGCTGATGCAAATAAAGGTGATATCCTGCTTCCTGTTGTCAC
TAAGGATTCTATCCATATAAAAATTCAACAGAGAAATAGCAGGAAGATCCTTACTACTGATCCTTACTACTGCTGATATT
ACAATAAAAAGAAACTAATGAGGGCATTTAAGAAGAAATTTGCCTGCAATGGTACTGTAACTAAGCATGCAGAATATGGA
GAACTAATTCAGCTACAGCATGACCAGCGCAAGAACATATGCCAGTTTCTCATAGAGACTGGACTGGCTATGGATGACCA
GCTGAAGGTTCATGGATTT

ORF - retro_pvam_471 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 71.68 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN
MS.IQNLHSFDPFADA.KGD.LLP..T.D.IHI.IQQRN.R............Y.KKKL..AFKKKFACN
RetrocopyMSTIQNLHSFDPFADANKGDILLPVVTKDSIHIKIQQRNSRXXXXXXXXXX*YYNKKKLMRAFKKKFACN
ParentalGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF
GTV..H.EYGE.IQLQ.DQRKNICQFL.E.GLA.DDQLKVHGF
RetrocopyGTVTKHAEYGELIQLQHDQRKNICQFLIETGLAMDDQLKVHGF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_471 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 102 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000056209 retrocopies
Bos taurus ENSBTAG000000022821 retrocopy
Callithrix jacchus ENSCJAG000000121206 retrocopies
Dasypus novemcinctus ENSDNOG0000000785611 retrocopies
Dipodomys ordii ENSDORG000000138534 retrocopies
Felis catus ENSFCAG000000244552 retrocopies
Homo sapiens ENSG000001738122 retrocopies
Macropus eugenii ENSMEUG000000153606 retrocopies
Myotis lucifugus ENSMLUG000000050773 retrocopies
Mustela putorius furoENSMPUG000000108836 retrocopies
Nomascus leucogenys ENSNLEG000000110133 retrocopies
Otolemur garnettii ENSOGAG000000315776 retrocopies
Pongo abelii ENSPPYG000000296671 retrocopy
Pan troglodytes ENSPTRG000000091753 retrocopies
Pteropus vampyrus ENSPVAG00000010629 4 retrocopies
Rattus norvegicus ENSRNOG0000003376515 retrocopies
Sorex araneus ENSSARG000000062871 retrocopy
Sarcophilus harrisii ENSSHAG000000057291 retrocopy
Ictidomys tridecemlineatus ENSSTOG0000000271915 retrocopies
Tursiops truncatus ENSTTRG000000171353 retrocopies



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