RetrogeneDB ID: | retro_ptro_1261 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 18:31850873..31851212(+) | ||
Located in intron of: | ENSPTRG00000009974 | ||
Retrocopyinformation | Ensembl ID: | ENSPTRG00000040263 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF1 | ||
Ensembl ID: | ENSPTRG00000009175 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:3249] |
Percent Identity: | 99.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN |
MSAIQNLHSFD.FADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN | |
Retrocopy | MSAIQNLHSFDSFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN |
Parental | GTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF |
GTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF | |
Retrocopy | GTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 3 .86 RPM | 303 .31 RPM |
SRP007412_cerebellum | 0 .43 RPM | 215 .56 RPM |
SRP007412_heart | 0 .47 RPM | 188 .40 RPM |
SRP007412_kidney | 0 .52 RPM | 260 .29 RPM |
SRP007412_liver | 0 .46 RPM | 169 .33 RPM |
SRP007412_testis | 0 .74 RPM | 130 .25 RPM |