RetrogeneDB ID: | retro_itri_285 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393282.1:14115515..14115853(+) | ||
Located in intron of: | ENSSTOG00000010169 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF1 | ||
Ensembl ID: | ENSSTOG00000002719 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:3249] |
Percent Identity: | 92.11 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFA-C |
.SAIQNLHSF..FADASKGDDLL.AGTED.IHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFA.. | |
Retrocopy | LSAIQNLHSFNLFADASKGDDLLSAGTEDSIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFA<L |
Parental | NGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF |
NGTVIEHPEYGEVIQLQGDQRKN.CQFLVEIGLAKD.QLKVHGF | |
Retrocopy | NGTVIEHPEYGEVIQLQGDQRKNLCQFLVEIGLAKDNQLKVHGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |