RetrogeneDB ID: | retro_itri_1184 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393395.1:40113..40436(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF1 | ||
Ensembl ID: | ENSSTOG00000002719 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:3249] |
Percent Identity: | 70.64 % |
Parental protein coverage: | 95.58 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | NLHSFDPFADASKGDDLLPAGTE-DYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVI |
NL.SFD.FADAS.GD.LLP.GT..DY.H.RI..RNGR.TLT.V.GIA..Y.KKKLVK.FKKKFACN.T.. | |
Retrocopy | NLYSFDSFADASTGDSLLPNGTG<DYTHMRIL*RNGRNTLTSVPGIAYGYSKKKLVKVFKKKFACNSTAN |
Parental | EHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF |
.H..YGEVIQL.GDQ.KNICQ.LVE.GLAK...L.VHGF | |
Retrocopy | GHSKYGEVIQL*GDQCKNICQLLVETGLAKAHKLMVHGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |