RetrogeneDB ID: | retro_itri_1784 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393768.1:330504..330742(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000004797 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF1 | ||
Ensembl ID: | ENSSTOG00000002719 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:3249] |
Percent Identity: | 80.25 % |
Parental protein coverage: | 70.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RIQQRNGR-KTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGL |
RIQQRNGR...L....G..DDY.KKKLVK.F..KFAC.GTVIEHPEYGEVIQLQGDQRKNICQFLVEIGL | |
Retrocopy | RIQQRNGR>RPLLLSKG-SDDYNKKKLVKVFNNKFACHGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGL |
Parental | AKDDQLKVHGF |
AKDD..KVHGF | |
Retrocopy | AKDDRPKVHGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |