RetrogeneDB ID: | retro_ptro_2030 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 4:163894915..163895324(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS14 | ||
Ensembl ID: | ENSPTRG00000017418 | ||
Aliases: | None | ||
Description: | ribosomal protein S14 [Source:HGNC Symbol;Acc:10387] |
Percent Identity: | 55.4 % |
Parental protein coverage: | 90.73 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | EKKEEQVISLGPQV-AEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGG-MKVKADRDESSPYAAM |
E..EEQVIS.G.Q..A..EN.F.VCH.F..FNDT.VHV.D.S.K.TIC..TGG.MK.K.DR.E.SP...M | |
Retrocopy | EGNEEQVISFGFQG<AKVENIFYVCHVF*PFNDTSVHVIDISDK*TICCMTGG<MKNKGDRNELSP*TTM |
Parental | LAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKG |
LA...VAQ.CK.L.I.A.HI.L..TGGN..K.PGPGAQS.L.A.A..G...G.I.DV..I........G | |
Retrocopy | LAIHNVAQKCKGLDIVAIHIILQTTGGNTAKIPGPGAQSVLSAFAH*GKETGQIKDVIDIL*QHSQEEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 194 .37 RPM |
SRP007412_cerebellum | 0 .00 RPM | 223 .23 RPM |
SRP007412_heart | 0 .00 RPM | 179 .92 RPM |
SRP007412_kidney | 0 .00 RPM | 394 .87 RPM |
SRP007412_liver | 0 .00 RPM | 302 .63 RPM |
SRP007412_testis | 0 .00 RPM | 216 .77 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3001 |
Gorilla gorilla | retro_ggor_2080 |
Pongo abelii | retro_pabe_2487 |