RetrogeneDB ID: | retro_tbel_1012 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3590:82970..83478(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHB | ||
Ensembl ID: | ENSTBEG00000010537 | ||
Aliases: | None | ||
Description: | prohibitin [Source:HGNC Symbol;Acc:8912] |
Percent Identity: | 75.58 % |
Parental protein coverage: | 62.5 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAAKVFESIGKFGLALAVAGGVVNSALYNVDAG-HRAVIFDRFR-GVQDIVVGEGTHFLIPWVQKPIIFD |
MAA.VFES.GKF.LA.AVAGGVVN.AL.NVDAG.HRAVIFDRF..GVQDIVV.EGT...IP.V.KP.IF. | |
Retrocopy | MAATVFESTGKFSLASAVAGGVVNPALTNVDAG<HRAVIFDRFL<GVQDIVVREGTLVPIP*VRKPMIFY |
Parental | CRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGE |
..S.P.NVPVITGSKDLQN....LR.L.RPVAS.LP.IFT...EDYDE..L.SITTEILKSVVAR.DA.E | |
Retrocopy | FCSQPCNVPVITGSKDLQNAHMALRSLSRPVASLLPCIFTRVSEDYDEPGLRSITTEILKSVVARSDAKE |
Parental | LITQRELVSRQVSDDLTERAATFGLILDDVSL |
LI.QR.LVSRQVSDDLTERAATFGLI.D..SL | |
Retrocopy | LIPQRALVSRQVSDDLTERAATFGLIPDVPSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |