RetrogeneDB ID: | retro_mmul_151 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 20:75720370..75721186(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000001931 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2808 | ||
Ensembl ID: | ENSMMUG00000000156 | ||
Aliases: | PHB, ZNF607 | ||
Description: | prohibitin [Source:RefSeq peptide;Acc:NP_001253252] |
Percent Identity: | 83.14 % |
Parental protein coverage: | 95.96 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCR |
MAAKVFESIG.FGLAL.V.GG..NSAL.NV..GH.AVIFDRF.GVQDIVVGEGTHFLIPWVQKPI.FDC. | |
Retrocopy | MAAKVFESIGEFGLALVVVGGMLNSALHNVNTGHIAVIFDRFCGVQDIVVGEGTHFLIPWVQKPITFDCC |
Parental | SRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELI |
SRP.NVPVITGSKDLQNV.ITL.ILFRPVASQLP.IFTSI.EDYDERVLPSI.T.I.KSVV..FDAGELI | |
Retrocopy | SRPPNVPVITGSKDLQNVSITLCILFRPVASQLPCIFTSIREDYDERVLPSIVTKIFKSVVSCFDAGELI |
Parental | TQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAA |
T.REL.SRQVSD..TE.AATFGLILDDVSLTH..F.K.FTEAVE.K..AQQEAERARFVVEKAEQQK.A. | |
Retrocopy | THRELLSRQVSDKFTEPAATFGLILDDVSLTHPIFQKDFTEAVETKEGAQQEAERARFVVEKAEQQKMAT |
Parental | IISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLP |
IISAEGDS.AA.L..NSLATAGD.LIEL.KLEAAEDIAYQLSRS.NI.YLP | |
Retrocopy | IISAEGDSMAAKLVPNSLATAGDHLIELSKLEAAEDIAYQLSRSGNIIYLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 18 .15 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 59 .58 RPM |
SRP007412_cerebellum | 0 .00 RPM | 18 .15 RPM |
SRP007412_heart | 0 .00 RPM | 57 .83 RPM |
SRP007412_kidney | 0 .00 RPM | 79 .93 RPM |
SRP007412_liver | 0 .00 RPM | 155 .21 RPM |
SRP007412_testis | 0 .00 RPM | 10 .48 RPM |