RetrogeneDB ID: | retro_mmul_1565 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 20:51158283..51158730(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2808 | ||
Ensembl ID: | ENSMMUG00000000156 | ||
Aliases: | PHB, ZNF607 | ||
Description: | prohibitin [Source:RefSeq peptide;Acc:NP_001253252] |
Percent Identity: | 85.23 % |
Parental protein coverage: | 54.78 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGS |
GL......G..NSA.YNVDAGHR.VI.DRFRG.QDIVVGEGTHFLIPWVQKPIIFDC.SRPRNVPVITGS | |
Retrocopy | GLSCCRRPGERNSASYNVDAGHRTVISDRFRGGQDIVVGEGTHFLIPWVQKPIIFDCPSRPRNVPVITGS |
Parental | KDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSD |
KDLQNVNITL.ILFRPVASQLPRIFTSIGED.DER.LPSITT.ILKSVVARFDAGELITQRELVSRQVS. | |
Retrocopy | KDLQNVNITLLILFRPVASQLPRIFTSIGEDCDERGLPSITTKILKSVVARFDAGELITQRELVSRQVSN |
Parental | DLTERAATF |
DLT.RA... | |
Retrocopy | DLTYRASSY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 18 .15 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 59 .58 RPM |
SRP007412_cerebellum | 0 .00 RPM | 18 .15 RPM |
SRP007412_heart | 0 .00 RPM | 57 .83 RPM |
SRP007412_kidney | 0 .00 RPM | 79 .93 RPM |
SRP007412_liver | 0 .00 RPM | 155 .21 RPM |
SRP007412_testis | 0 .00 RPM | 10 .48 RPM |