RetrogeneDB ID: | retro_rnor_543 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:254725456..254726137(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Phb | ||
Ensembl ID: | ENSRNOG00000046799 | ||
Aliases: | None | ||
Description: | Prohibitin [Source:UniProtKB/Swiss-Prot;Acc:P67779] |
Percent Identity: | 92.21 % |
Parental protein coverage: | 84.93 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | FRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIYTSIG |
.RG.QDIVVGE.THFLI.WVQKP.IFDCRSRP.NVPVITGSKDLQNVNITLRILFRPVASQLP.IYTS.G | |
Retrocopy | YRGIQDIVVGERTHFLIRWVQKPVIFDCRSRPPNVPVITGSKDLQNVNITLRILFRPVASQLPHIYTSVG |
Parental | EDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTE |
ED.DERVLPSITTEILKSVVAR.DAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTH.TFGKEFTE | |
Retrocopy | EDHDERVLPSITTEILKSVVARLDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHPTFGKEFTE |
Parental | AVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQL |
AVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIA.SLATAGDGLI.L.KLEAAEDIAYQL | |
Retrocopy | AVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIASSLATAGDGLIKL*KLEAAEDIAYQL |
Parental | SRSRNITYLPAGQSVLLQLPQ |
SRS....YLPAGQSVLLQLPQ | |
Retrocopy | SRS----YLPAGQSVLLQLPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 26 .39 RPM |
SRP017611_kidney | 0 .14 RPM | 63 .85 RPM |
SRP017611_liver | 0 .00 RPM | 44 .85 RPM |