RetrogeneDB - Parental gene ENSGGOG00000028002 details

Parental gene:	PHB, ENSGGOG00000028002
Aliases:	None
Description:	None
Organism:	*Gorilla (Gorilla gorilla)*
Coordinates:	5:34652418..34661646(+)

							
>ENSGGOG00000028002
ATGGCTGCCAAAGTGTTTGAGTCCATTGGCAAGTTTGGCCTGGCCTTAGCTGTTGCAGGAGGCGTGGTGAACTCTGCCTT

ATATAATGTGGATGCTGGGCACAGAGCTGTCATCTTTGACCGATTCCGTGGAGTGCAGGACATTGTGGTAGGGGAAGGGA

CTCATTTTCTCATCCCATGGGTACAGAAACCAATTATCTTTGACTGCCGTTCTCGACCACGTAATGTGCCAGTCATCACT

GGTAGCAAAGATTTACAGAATGTCAACATCACACTGCGCATCCTCTTCCGGCCCGTTGCCAGCCAGCTTCCTCGCATCTT

CACCAGCATCGGAGAGGACTATGATGAGCGTGTGCTGCCGTCCATCACAACCGAGATCCTCAAGTCAGTGGTGGCTCGCT

TTGATGCTGGAGAACTAATCACCCAGAGAGAGCTGGTCTCCAGGCAGGTGAGCGACGACCTTACGGAGCGAGCCGCCACC

TTTGGGCTCATCCTGGATGACGTGTCCTTGACACATCTGACCTTCGGGAAGGAGTTCACAGAAGCGGTGGAAGCCAAACA

GGTGGCTCAGCAGGAAGCAGAGAGGGCCAGATTTGTGGTGGAAAAGGCTGAGCAACAGAAAAAGGCGGCCATCATCTCTG

CTGAGGGCGACTCCAAGGCAGCTGAGCTGATTGCCAACTCACTGGCCACTGCAGGGGATGGCCTGATCGAGCTGCGCAAG

CTGGAAGCTGCAGAGGACATCGCGTACCAGCTCTCACGCTCTCGGAACATCACCTACCTGCCGGCGGGGCAGTCCGTGCT

CCTCCAGCTGCCCCAGTGA

Library	Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex	90 .20 RPM
SRP007412_cerebellum	56 .06 RPM
SRP007412_heart	85 .96 RPM
SRP007412_kidney	311 .98 RPM
SRP007412_liver	94 .01 RPM
SRP007412_testis	61 .12 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000004797	ortholog_one2many	1 retrogene	retro_acar_49,
Ailuropoda melanoleuca	ENSAMEG00000012364	possible_ortholog	1 retrogene	retro_amel_258,
Bos taurus	ENSBTAG00000017120	possible_ortholog	1 retrogene	retro_btau_481,
Canis familiaris	ENSCAFG00000016926	possible_ortholog	1 retrogene	retro_cfam_202,
Choloepus hoffmanni	ENSCHOG00000007588	possible_ortholog	2 retrogenes	retro_chof_1159, retro_chof_2193,
Callithrix jacchus	ENSCJAG00000007174	possible_ortholog	22 retrogenes	retro_cjac_1048, retro_cjac_1403, retro_cjac_1683, retro_cjac_1761, retro_cjac_1820, retro_cjac_2261, retro_cjac_2389, retro_cjac_2390, retro_cjac_2391, retro_cjac_2445, retro_cjac_2523, retro_cjac_2659, retro_cjac_2663, retro_cjac_2909, retro_cjac_4205, retro_cjac_570, retro_cjac_635, retro_cjac_662, retro_cjac_872, retro_cjac_937, retro_cjac_966, retro_cjac_980,
Erinaceus europaeus	ENSEEUG00000006481	ortholog_one2many	3 retrogenes	retro_eeur_219, retro_eeur_285, retro_eeur_369,
Homo sapiens	ENSG00000167085	possible_ortholog	15 retrogenes	retro_hsap_1113, retro_hsap_1514, retro_hsap_161, retro_hsap_1640, retro_hsap_2170, retro_hsap_2692, retro_hsap_3534, retro_hsap_3750, retro_hsap_3868, retro_hsap_3869, retro_hsap_4186, retro_hsap_4888, retro_hsap_517, retro_hsap_617, retro_hsap_776,
Macropus eugenii	ENSMEUG00000005122	ortholog_one2many	1 retrogene	retro_meug_708,
Microcebus murinus	ENSMICG00000006966	possible_ortholog	9 retrogenes	retro_mmur_1097, retro_mmur_1297, retro_mmur_1374, retro_mmur_1426, retro_mmur_1483, retro_mmur_1537, retro_mmur_1626, retro_mmur_62, retro_mmur_881,
Myotis lucifugus	ENSMLUG00000008203	possible_ortholog	2 retrogenes	retro_mluc_116, retro_mluc_2190,
Macaca mulatta	ENSMMUG00000000156	possible_ortholog	13 retrogenes	retro_mmul_1096, retro_mmul_1119, retro_mmul_1165, retro_mmul_1425, retro_mmul_151, retro_mmul_1565, retro_mmul_2148, retro_mmul_2420, retro_mmul_426, retro_mmul_521, retro_mmul_834, retro_mmul_866, retro_mmul_933,
Monodelphis domestica	ENSMODG00000012210	ortholog_one2many	1 retrogene	retro_mdom_812,
Mus musculus	ENSMUSG00000038845	possible_ortholog	8 retrogenes	retro_mmus_1089, retro_mmus_1321, retro_mmus_3522, retro_mmus_3530, retro_mmus_3535, retro_mmus_3649, retro_mmus_3657, retro_mmus_822,
Nomascus leucogenys	ENSNLEG00000002978	possible_ortholog	13 retrogenes	retro_nleu_1190, retro_nleu_1254, retro_nleu_1326, retro_nleu_1557, retro_nleu_1755, retro_nleu_1796, retro_nleu_1874, retro_nleu_191, retro_nleu_195, retro_nleu_2547, retro_nleu_2573, retro_nleu_402, retro_nleu_444,
Oryctolagus cuniculus	ENSOCUG00000007209	possible_ortholog	1 retrogene	retro_ocun_579,
Otolemur garnettii	ENSOGAG00000027015	possible_ortholog	1 retrogene	retro_ogar_968,
Ochotona princeps	ENSOPRG00000000868	possible_ortholog	2 retrogenes	retro_opri_180, retro_opri_734,
Procavia capensis	ENSPCAG00000008851	ortholog_one2many	1 retrogene	retro_pcap_74,
Pongo abelii	ENSPPYG00000008920	possible_ortholog	16 retrogenes	retro_pabe_1262, retro_pabe_1357, retro_pabe_1409, retro_pabe_1770, retro_pabe_2291, retro_pabe_289, retro_pabe_3030, retro_pabe_3034, retro_pabe_3426, retro_pabe_3427, retro_pabe_3800, retro_pabe_552, retro_pabe_753, retro_pabe_922, retro_pabe_925, retro_pabe_977,
Pan troglodytes	ENSPTRG00000009376	possible_ortholog	14 retrogenes	retro_ptro_1025, retro_ptro_1110, retro_ptro_154, retro_ptro_1656, retro_ptro_1817, retro_ptro_2401, retro_ptro_2545, retro_ptro_2841, retro_ptro_2964, retro_ptro_3256, retro_ptro_386, retro_ptro_451, retro_ptro_542, retro_ptro_686,
Rattus norvegicus	ENSRNOG00000046799	possible_ortholog	18 retrogenes	retro_rnor_1058, retro_rnor_1416, retro_rnor_1540, retro_rnor_1542, retro_rnor_2398, retro_rnor_2399, retro_rnor_2610, retro_rnor_2653, retro_rnor_2815, retro_rnor_2826, retro_rnor_2848, retro_rnor_2855, retro_rnor_2909, retro_rnor_292, retro_rnor_2948, retro_rnor_2949, retro_rnor_543, retro_rnor_898,
Ictidomys tridecemlineatus	ENSSTOG00000019929	possible_ortholog	2 retrogenes	retro_itri_337, retro_itri_945,
Tupaia belangeri	ENSTBEG00000010537	possible_ortholog	4 retrogenes	retro_tbel_1012, retro_tbel_2085, retro_tbel_264, retro_tbel_2949,
Tursiops truncatus	ENSTTRG00000010836	possible_ortholog	1 retrogene	retro_ttru_639,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_ggor_124	85.61	99.63	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_ggor_238	57.53	62.78	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_ggor_246	88.97	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_ggor_476	87.55	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_ggor_643	85.71	51.47	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_ggor_741	71.67	64.71	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_ggor_870	83.15	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_ggor_1722	77.14	51.47	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_ggor_1876	89.29	72.06	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_ggor_2387	84.62	100.00	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_ggor_2607	63.68	68.01	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_ggor_3053	86.26	95.96	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSGGOG00000028002 retrocopies

Parental gene:

PHB, ENSGGOG00000028002