RetrogeneDB ID: | retro_rnor_2399 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:127726070..127726886(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Phb | ||
Ensembl ID: | ENSRNOG00000046799 | ||
Aliases: | None | ||
Description: | Prohibitin [Source:UniProtKB/Swiss-Prot;Acc:P67779] |
Percent Identity: | 91.97 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCR |
MAAKV.ESIGKFGLALAVAG.VVNS.LYNVDAGHRAVIFD.F.GVQDIVVGEGTHFLIPWVQKPI.FDC. | |
Retrocopy | MAAKVIESIGKFGLALAVAGDVVNSDLYNVDAGHRAVIFDQFSGVQDIVVGEGTHFLIPWVQKPILFDCC |
Parental | SRPRNVPVITGSKDLQNVNITLR-ILFRPVASQLPRIYTSIGEDYDERVLPSITTEILKSVVARFDAGEL |
SRPRNVPVITGSKD.QNVNIT...ILFRPVASQLP.IYTSIGEDYDERVLPS.TTEILKSVVARFDAGEL | |
Retrocopy | SRPRNVPVITGSKDFQNVNITML<ILFRPVASQLPGIYTSIGEDYDERVLPSVTTEILKSVVARFDAGEL |
Parental | ITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKA |
ITQRELVSRQVSD.LTERAATFGLILDDVSLTHLT.GKE.TEAVEAK.VAQQEAERARFVVEKAEQQ.KA | |
Retrocopy | ITQRELVSRQVSDVLTERAATFGLILDDVSLTHLTCGKELTEAVEAK*VAQQEAERARFVVEKAEQQNKA |
Parental | AIISAE-GDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPAGQSVLLQLPQ |
AIISAE.GDSKAAELIANSLAT.GDGLIELRKLEAAEDIA.QLS.SRNITYLPAGQSVLLQLPQ | |
Retrocopy | AIISAE>GDSKAAELIANSLATSGDGLIELRKLEAAEDIAFQLSHSRNITYLPAGQSVLLQLPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 26 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 63 .85 RPM |
SRP017611_liver | 0 .00 RPM | 44 .85 RPM |