RetrogeneDB ID: | retro_rnor_2949 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:81105743..81106360(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Phb | ||
Ensembl ID: | ENSRNOG00000046799 | ||
Aliases: | None | ||
Description: | Prohibitin [Source:UniProtKB/Swiss-Prot;Acc:P67779] |
Percent Identity: | 91.79 % |
Parental protein coverage: | 75.74 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | FDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIYTSIGEDYDERVLPSITTEILKSVVARFDA |
FDC.SRPRNVPVITGSKDLQNVNITL.ILFRPVASQLP.IYTSIGEDYDE.VLPS.TTEILKSV.ARFDA | |
Retrocopy | FDCHSRPRNVPVITGSKDLQNVNITLCILFRPVASQLPCIYTSIGEDYDEQVLPSSTTEILKSVMARFDA |
Parental | GELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQ |
GELI.QREL.SRQVSDDLTERA.TFGLILD.VSLTHLTF.KEFTEAVEAKQVAQQEAERARFVVEKAEQQ | |
Retrocopy | GELIAQRELLSRQVSDDLTERATTFGLILDEVSLTHLTFRKEFTEAVEAKQVAQQEAERARFVVEKAEQQ |
Parental | KKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSR-SRNITYLPAGQSVLLQLPQ |
KKAAIISAEG..KAAELIANSLATAGDGLI.L.KLEAAEDIAYQLS..SRNITYLPAGQSVLLQLPQ | |
Retrocopy | KKAAIISAEGNFKAAELIANSLATAGDGLIGL*KLEAAEDIAYQLSH<SRNITYLPAGQSVLLQLPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 26 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 63 .85 RPM |
SRP017611_liver | 0 .00 RPM | 44 .85 RPM |