RetrogeneDB ID: | retro_ggor_870 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 12:46104742..46105556(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHB | ||
Ensembl ID: | ENSGGOG00000028002 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGH-RAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDC |
MAAKVFESIGKFG.ALAVAGGVVNSALYNV.AG..RAVIFDRFRGVQDIVVGE.THFLIPWVQKPIIFDC | |
Retrocopy | MAAKVFESIGKFGPALAVAGGVVNSALYNVYAGR>RAVIFDRFRGVQDIVVGEETHFLIPWVQKPIIFDC |
Parental | RSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGEL |
.S.PRNVPVITGSKDLQNVNITLRI.FRP..SQLPRIF.SIG.DYDERVL.SITT..LKSVVA.FDAGE. | |
Retrocopy | HSPPRNVPVITGSKDLQNVNITLRIIFRPIVSQLPRIF-SIGDDYDERVLTSITTKVLKSVVASFDAGEV |
Parental | ITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKA |
ITQRELVSRQV..DLTE.AATFGLILDDVSLTHLTFGKEFTEA..AKQVAQQEAERAR.VVE.AEQQKKA | |
Retrocopy | ITQRELVSRQVNNDLTEQAATFGLILDDVSLTHLTFGKEFTEAL*AKQVAQQEAERARSVVETAEQQKKA |
Parental | AIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPAGQSVLLQLPQ |
AIISA.GDSKAAELI...L........EL.KLEAAEDIA.QLSRS....YL.AGQ.VLL.L.Q | |
Retrocopy | AIISAAGDSKAAELIDCQLTGHRRRRPELPKLEAAEDIA*QLSRSQSMIYLLAGQTVLLWLLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .10 RPM | 90 .20 RPM |
SRP007412_cerebellum | 0 .08 RPM | 56 .06 RPM |
SRP007412_heart | 0 .00 RPM | 85 .96 RPM |
SRP007412_kidney | 0 .00 RPM | 311 .98 RPM |
SRP007412_liver | 0 .00 RPM | 94 .01 RPM |
SRP007412_testis | 0 .52 RPM | 61 .12 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1113 |
Pan troglodytes | retro_ptro_686 |
Pongo abelii | retro_pabe_922 |