RetrogeneDB ID: | retro_rnor_2653 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 8:127761390..127762072(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Phb | ||
Ensembl ID: | ENSRNOG00000046799 | ||
Aliases: | None | ||
Description: | Prohibitin [Source:UniProtKB/Swiss-Prot;Acc:P67779] |
Percent Identity: | 85.22 % |
Parental protein coverage: | 84.19 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | RGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIYTSIGE |
RGVQDIVVGEGTH.L.PWVQKPIIFDC.SRP.NVPVITG.KDLQNVNI.L.ILFRPVASQLP.IYTSIGE | |
Retrocopy | RGVQDIVVGEGTHVLNPWVQKPIIFDCSSRPGNVPVITGGKDLQNVNIVLHILFRPVASQLPHIYTSIGE |
Parental | DYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAA-TFGLILDDVSLTHLTFGKEFTE |
D..ER.LPSITTEILKSVVARFDAGELITQR..VSRQ.SDDLTE.AA.TFGLILDD.SLTHLTF.KEFTE | |
Retrocopy | D*NERALPSITTEILKSVVARFDAGELITQRAVVSRQASDDLTEQAA>TFGLILDDASLTHLTFRKEFTE |
Parental | AVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQL |
AVEA.QVAQQ...RARFVVEKAE.QK.AAIIS.EG.SKAAEL.ANSLATAGD.L.ELRKLEAAE.IAYQL | |
Retrocopy | AVEANQVAQQK-*RARFVVEKAE-QKAAAIISGEGNSKAAELLANSLATAGDSLMELRKLEAAENIAYQL |
Parental | SRSRNITYLPAGQSVLLQLP |
..S.NIT.LPAGQSVLLQLP | |
Retrocopy | FHSQNITHLPAGQSVLLQLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 26 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 63 .85 RPM |
SRP017611_liver | 0 .07 RPM | 44 .85 RPM |