RetrogeneDB ID: | retro_rnor_2948 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:78483143..78483798(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Phb | ||
Ensembl ID: | ENSRNOG00000046799 | ||
Aliases: | None | ||
Description: | Prohibitin [Source:UniProtKB/Swiss-Prot;Acc:P67779] |
Percent Identity: | 74.09 % |
Parental protein coverage: | 80.51 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 1 |
Parental | THFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIYTSIGEDYDERVLPSIT |
THFLIP.VQKPIIF.C.S...NVPVIT.SKDL..VNIT..IL..P..SQLP.IY.SI.E.YDE.VLPSIT | |
Retrocopy | THFLIP*VQKPIIFGCHSQS*NVPVITRSKDLEDVNITQSILLQPSPSQLPHIYNSIDEHYDEQVLPSIT |
Parental | TEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFG-KEFTEAVEAKQVAQQE |
TE.LKSVVA.FDA.EL.TQ.ELVSRQV.DDL.E.A.T..L..DD.SLT.LTFG.KEF.EAVEAK.VA.QE | |
Retrocopy | TELLKSVVAHFDAEELTTQ*ELVSRQVNDDLLE*ATTSELNFDDISLTNLTFG>KEFPEAVEAK*VARQE |
Parental | AERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPA |
AE.A.FVV.K.EQ...AAIISAEGDSKAAELI.NSLAT.GDGLIE..KLE.AE.I.YQL.RS.NI.Y.PA | |
Retrocopy | AETAKFVVLKDEQY*VAAIISAEGDSKAAELITNSLATTGDGLIEP*KLEPAENIVYQLCRSGNI-YMPA |
Parental | GQSVLLQLPQ |
GQSVLLQLPQ | |
Retrocopy | GQSVLLQLPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 26 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 63 .85 RPM |
SRP017611_liver | 0 .00 RPM | 44 .85 RPM |