Parental gene:

ENSCJAG00000007174

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:108125323..108140155(+)


>ENSCJAG00000007174
ATGGCTGCCAAAGTGTTTGAGTCCATTGGCAAGTTTGGCCTGGCCTTAGCTGTTGCAGGAGGCGTGGTAAACTCGGCCTT
ATATAATGTGGATGCTGGGCACAGAGCTGTCATCTTTGACCGATTCCGTGGAGTACAGGACATTGTGGTAGGGGAAGGGA
CTCACTTTCTCATCCCATGGGTACAGAAACCAATTATCTTTGACTGCCGTTCTCGGCCACGTAATGTGCCAGTCATCACT
GGTAGCAAAGATTTACAGAATGTCAACATCACACTGCGCATCCTCTTCCGGCCTGTTGCTAGCCAGCTGCCTCGCATCTT
CACCAGCATCGGAGAGGACTATGATGAGCGGGTGCTGCCGTCCATAACCACCGAGATCCTCAAGTCAGTGGTGGCTCGCT
TTGATGCTGGAGAGCTAATCACCCAGAGAGAGCTGGTCTCCAGGCAGGTGAGCGATGACCTTACGGAACGAGCAGCCACC
TTTGGGCTCATCCTGGACGATGTGTCCTTGACACATCTGACCTTCGGGAAGGAGTTCACAGAAGCAGTGGAAGCCAAACA
GGTGGCTCAGCAGGAAGCAGAGAGAGCCAGATTTGTGGTGGAAAAGGCTGAGCAGCAGAAAAAGGCGGCCATCATCTCTG
CTGAGGGCGACTCCAAGGCAGCTGAGCTGATTGCCAACTCACTGGCCACCGCAGGGGACGGCCTGATCGAGCTGCGCAAG
CTGGAAGCTGCGGAGGACATCGCGTACCAGCTGTCACGCTCTCGGAACATCACCTACCTGCCGGCGGGGCAGTCCGTGCT
CCTCCAGCTGCCCCAGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 14 .35 RPM
SRP051959_skeletal_muscle 33 .89 RPM
SRP051959_lymph_node 13 .06 RPM
SRP051959_lung 15 .55 RPM
SRP051959_liver 38 .12 RPM
SRP051959_kidney 39 .49 RPM
SRP051959_heart 28 .57 RPM
SRP051959_colon 25 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000004797 ortholog_one2many 1 retrogene
retro_acar_49,
Ailuropoda melanoleuca ENSAMEG00000012364 possible_ortholog 1 retrogene
retro_amel_258,
Bos taurus ENSBTAG00000017120 possible_ortholog 1 retrogene
retro_btau_481,
Canis familiaris ENSCAFG00000016926 possible_ortholog 1 retrogene
retro_cfam_202,
Choloepus hoffmanni ENSCHOG00000007588 possible_ortholog 2 retrogenes
retro_chof_1159, retro_chof_2193,
Erinaceus europaeus ENSEEUG00000006481 ortholog_one2many 3 retrogenes
retro_eeur_219, retro_eeur_285, retro_eeur_369,
Homo sapiens ENSG00000167085 ortholog_one2many 15 retrogenes
retro_hsap_1113, retro_hsap_1514, retro_hsap_161, retro_hsap_1640, retro_hsap_2170, retro_hsap_2692, retro_hsap_3534, retro_hsap_3750, retro_hsap_3868, retro_hsap_3869, retro_hsap_4186, retro_hsap_4888, retro_hsap_517, retro_hsap_617, retro_hsap_776,
Gorilla gorilla ENSGGOG00000028002 possible_ortholog 12 retrogenes
retro_ggor_124, retro_ggor_1722, retro_ggor_1876, retro_ggor_238, retro_ggor_2387, retro_ggor_246, retro_ggor_2607, retro_ggor_3053, retro_ggor_476, retro_ggor_643, retro_ggor_741, retro_ggor_870,
Macropus eugenii ENSMEUG00000005122 ortholog_one2many 1 retrogene
retro_meug_708,
Microcebus murinus ENSMICG00000006966 possible_ortholog 9 retrogenes
retro_mmur_1097, retro_mmur_1297, retro_mmur_1374, retro_mmur_1426, retro_mmur_1483, retro_mmur_1537, retro_mmur_1626, retro_mmur_62, retro_mmur_881,
Myotis lucifugus ENSMLUG00000008203 possible_ortholog 2 retrogenes
retro_mluc_116, retro_mluc_2190,
Macaca mulatta ENSMMUG00000000156 possible_ortholog 13 retrogenes
retro_mmul_1096, retro_mmul_1119, retro_mmul_1165, retro_mmul_1425, retro_mmul_151, retro_mmul_1565, retro_mmul_2148, retro_mmul_2420, retro_mmul_426, retro_mmul_521, retro_mmul_834, retro_mmul_866, retro_mmul_933,
Monodelphis domestica ENSMODG00000012210 ortholog_one2many 1 retrogene
retro_mdom_812,
Mus musculus ENSMUSG00000038845 possible_ortholog 8 retrogenes
retro_mmus_1089, retro_mmus_1321, retro_mmus_3522, retro_mmus_3530, retro_mmus_3535, retro_mmus_3649, retro_mmus_3657, retro_mmus_822,
Nomascus leucogenys ENSNLEG00000002978 possible_ortholog 13 retrogenes
retro_nleu_1190, retro_nleu_1254, retro_nleu_1326, retro_nleu_1557, retro_nleu_1755, retro_nleu_1796, retro_nleu_1874, retro_nleu_191, retro_nleu_195, retro_nleu_2547, retro_nleu_2573, retro_nleu_402, retro_nleu_444,
Oryctolagus cuniculus ENSOCUG00000007209 possible_ortholog 1 retrogene
retro_ocun_579,
Otolemur garnettii ENSOGAG00000027015 possible_ortholog 1 retrogene
retro_ogar_968,
Ochotona princeps ENSOPRG00000000868 possible_ortholog 2 retrogenes
retro_opri_180, retro_opri_734,
Procavia capensis ENSPCAG00000008851 ortholog_one2many 1 retrogene
retro_pcap_74,
Pongo abelii ENSPPYG00000008920 ortholog_one2one 16 retrogenes
retro_pabe_1262, retro_pabe_1357, retro_pabe_1409, retro_pabe_1770, retro_pabe_2291, retro_pabe_289, retro_pabe_3030, retro_pabe_3034, retro_pabe_3426, retro_pabe_3427, retro_pabe_3800, retro_pabe_552, retro_pabe_753, retro_pabe_922, retro_pabe_925, retro_pabe_977,
Pan troglodytes ENSPTRG00000009376 ortholog_one2many 14 retrogenes
retro_ptro_1025, retro_ptro_1110, retro_ptro_154, retro_ptro_1656, retro_ptro_1817, retro_ptro_2401, retro_ptro_2545, retro_ptro_2841, retro_ptro_2964, retro_ptro_3256, retro_ptro_386, retro_ptro_451, retro_ptro_542, retro_ptro_686,
Rattus norvegicus ENSRNOG00000046799 possible_ortholog 18 retrogenes
retro_rnor_1058, retro_rnor_1416, retro_rnor_1540, retro_rnor_1542, retro_rnor_2398, retro_rnor_2399, retro_rnor_2610, retro_rnor_2653, retro_rnor_2815, retro_rnor_2826, retro_rnor_2848, retro_rnor_2855, retro_rnor_2909, retro_rnor_292, retro_rnor_2948, retro_rnor_2949, retro_rnor_543, retro_rnor_898,
Ictidomys tridecemlineatus ENSSTOG00000019929 possible_ortholog 2 retrogenes
retro_itri_337, retro_itri_945,
Tupaia belangeri ENSTBEG00000010537 possible_ortholog 4 retrogenes
retro_tbel_1012, retro_tbel_2085, retro_tbel_264, retro_tbel_2949,
Tursiops truncatus ENSTTRG00000010836 possible_ortholog 1 retrogene
retro_ttru_639,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_570 76.64 99.63
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2. retro_cjac_635 90.07 100.00
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3. retro_cjac_662 73.96 61.40
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4. retro_cjac_872 83.40 86.03
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5. retro_cjac_937 79.21 64.34
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6. retro_cjac_966 79.92 92.65
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7. retro_cjac_980 77.30 59.19
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8. retro_cjac_1048 96.69 100.00
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9. retro_cjac_1403 85.24 99.63
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10. retro_cjac_1683 80.88 99.63
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11. retro_cjac_1761 61.68 60.29
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12. retro_cjac_1820 82.14 80.51
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13. retro_cjac_2261 82.48 100.00
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14. retro_cjac_2389 78.31 60.66
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15. retro_cjac_2390 77.44 59.93
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16. retro_cjac_2391 75.30 60.66
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17. retro_cjac_2445 78.07 68.75
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18. retro_cjac_2523 93.01 100.00
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19. retro_cjac_2659 83.33 96.32
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20. retro_cjac_2663 95.22 100.00
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21. retro_cjac_2909 63.46 56.62
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22. retro_cjac_4205 80.00 52.57
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Download FASTA sequences of all ENSCJAG00000007174 retrocopies