RetrogeneDB ID: | retro_eeur_285 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_239933:5137..5949(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHB | ||
Ensembl ID: | ENSEEUG00000006481 | ||
Aliases: | None | ||
Description: | prohibitin [Source:HGNC Symbol;Acc:8912] |
Percent Identity: | 93.77 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAAKVFESIGKFGLSLAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCR |
MAAKVFESIGKFGL.LAVA.GVVNSALYNVDAGHRAVIF.R..GVQDIVVGE.THFLIPWVQKPIIFDC. | |
Retrocopy | MAAKVFESIGKFGLALAVARGVVNSALYNVDAGHRAVIFYRVCGVQDIVVGEDTHFLIPWVQKPIIFDCL |
Parental | SRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELI |
S.PRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSI.EDYD.RVLPSITTEILKSVVARFDAGELI | |
Retrocopy | SQPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIREDYDKRVLPSITTEILKSVVARFDAGELI |
Parental | TQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFG-KEFTEAVEAKQVAQQEAERARFVVEKAEQQKKA |
TQ.ELVSRQVSDDLTERAATFGLILDD.SLTHLTFG.KEFTEAVEAKQVAQQEAERARFVVEKAEQQ.KA | |
Retrocopy | TQKELVSRQVSDDLTERAATFGLILDDASLTHLTFG<KEFTEAVEAKQVAQQEAERARFVVEKAEQQ-KA |
Parental | AIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPSGQSVLLQLPQ |
AIIS.EGDSKAAELIANSLATAG.GLIELRKLEAAEDIAYQLSRS.NITYLPSGQSVLLQLPQ | |
Retrocopy | AIISTEGDSKAAELIANSLATAGEGLIELRKLEAAEDIAYQLSRSQNITYLPSGQSVLLQLPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 2 .90 RPM | 26 .11 RPM |
SRP017611_kidney | 18 .57 RPM | 112 .90 RPM |
SRP017611_liver | 4 .18 RPM | 44 .53 RPM |