RetrogeneDB ID: | retro_mmul_1165 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 15:94505182..94505640(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000013992 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2808 | ||
Ensembl ID: | ENSMMUG00000000156 | ||
Aliases: | PHB, ZNF607 | ||
Description: | prohibitin [Source:RefSeq peptide;Acc:NP_001253252] |
Percent Identity: | 84.42 % |
Parental protein coverage: | 56.25 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRIL |
.YNVDAGH.AV.FDRFRGVQ..I.VG.GTHFL.PW.QKP.IFDCRS.PRNVPVITGSKDLQNVNITL.I. | |
Retrocopy | IYNVDAGHTAVVFDRFRGVQ<GIEVGKGTHFLTPWLQKPVIFDCRSQPRNVPVITGSKDLQNVNITLSII |
Parental | FRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLIL |
FRPVASQLPRI.T.IGED.DERVLPSITTEILKSVVARF..GELI.QREL.SRQ.SDDLTERAA.FGLIL | |
Retrocopy | FRPVASQLPRILTRIGEDHDERVLPSITTEILKSVVARFGGGELISQRELISRQLSDDLTERAASFGLIL |
Parental | DDVSLTHLTFGKEF |
DD.SLTHLT.GKEF | |
Retrocopy | DDASLTHLTLGKEF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 18 .15 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 59 .58 RPM |
SRP007412_cerebellum | 0 .00 RPM | 18 .15 RPM |
SRP007412_heart | 0 .00 RPM | 57 .83 RPM |
SRP007412_kidney | 0 .00 RPM | 79 .93 RPM |
SRP007412_liver | 0 .04 RPM | 155 .21 RPM |
SRP007412_testis | 0 .00 RPM | 10 .48 RPM |
Species | RetrogeneDB ID |
---|---|
Callithrix jacchus | retro_cjac_570 |