RetrogeneDB ID: | retro_mmul_1096 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:28370666..28371254(-) | ||
Located in intron of: | ENSMMUG00000018465 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2808 | ||
Ensembl ID: | ENSMMUG00000000156 | ||
Aliases: | PHB, ZNF607 | ||
Description: | prohibitin [Source:RefSeq peptide;Acc:NP_001253252] |
Percent Identity: | 83.33 % |
Parental protein coverage: | 72.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | CRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGE |
C.SRP.N.PVITGSKDLQ.VNITLRILFRPVASQLP.IFTSIGEDYDERVL..ITT.ILKSVVA.FDAGE | |
Retrocopy | CHSRPCNAPVITGSKDLQIVNITLRILFRPVASQLPHIFTSIGEDYDERVLLPITTKILKSVVAHFDAGE |
Parental | LITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKK |
LITQRELVSRQVSDDLTERAATFG.ILD.V.LTHLTF.KEFTEA.EAK.VAQQEAERAR.VVEK.EQQKK | |
Retrocopy | LITQRELVSRQVSDDLTERAATFGFILDYVFLTHLTFRKEFTEAMEAKKVAQQEAERARYVVEKSEQQKK |
Parental | AAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPAGQSV |
AAI.SAEGDSKAAELI.NSLATAGD.LIEL..LEA.EDI.YQLS.S.....LPA...V | |
Retrocopy | AAIMSAEGDSKAAELITNSLATAGDSLIELCELEAVEDIVYQLSLSEH--HLPASRAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 18 .15 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 59 .58 RPM |
SRP007412_cerebellum | 0 .06 RPM | 18 .15 RPM |
SRP007412_heart | 0 .00 RPM | 57 .83 RPM |
SRP007412_kidney | 0 .12 RPM | 79 .93 RPM |
SRP007412_liver | 0 .00 RPM | 155 .21 RPM |
SRP007412_testis | 0 .04 RPM | 10 .48 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_776 |
Pan troglodytes | retro_ptro_542 |
Gorilla gorilla | retro_ggor_643 |
Pongo abelii | retro_pabe_753 |