Parental gene:

PHB, ENSCAFG00000016926

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:9:25526648..25535003(-)


>ENSCAFG00000016926
ATGGCTGCCAAAGTGTTTGAGTCCATTGGCAAGTTCGGCCTGGCCTTAGCTGTTGCAGGAGGAGTGGTGAATTCTGCCTT
GTATAATGTGGATGCTGGCCACAGAGCTGTCATCTTTGACCGGTTCCGTGGAGTACAGGACATTGTGGTAGGAGAAGGGA
CTCACTTTCTCATCCCTTGGGTACAGAAACCTATTATCTTTGATTGCCGCTCTCGACCACGTAATGTGCCAGTAATCACT
GGTAGCAAAGATTTACAGAATGTCAACATCACCCTGCGCATCCTTTTCCGACCAGTCGCCAGCCAGCTTCCTCGCATCTT
CACCAGCATTGGGGAGGACTATGATGAGCGGGTGCTACCGTCTATCACTACAGAGATCCTCAAGTCAGTGGTGGCTCGCT
TTGATGCTGGAGAACTGATCACCCAGAGAGAGCTGGTCTCCAGACAGGTGAGCGATGACCTAACAGAGCGAGCAGCAACC
TTTGGGCTCATCCTGGATGACGTGTCCTTGACGCATCTGACCTTCGGGAAGGAGTTCACAGAAGCAGTAGAAGCCAAACA
GGTGGCTCAGCAGGAAGCAGAGAGAGCCAGATTTGTGGTGGAAAAGGCTGAGCAGCAGAAGAAGGCGGCCATCATCTCCG
CCGGCGACTCCAAGGCAGCTGAGCTGATGACCAACTCGCTCGCCACAGCAGGCGACGGCCTCATCGAGCTGCGCAAGCTG
GAGGCTGCAGAGGACATCGCGTACCAGCTGTCACGCTCTCGGAATATCACCTACCTGCCGGCTGGGCAGTCTGTGCTCCT
GCAGCTGCCTCAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 15 .40 RPM
SRP017611_kidney 148 .91 RPM
SRP017611_liver 42 .49 RPM
SRP012049_cerebellum 30 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000004797 ortholog_one2many 1 retrogene
retro_acar_49,
Bos taurus ENSBTAG00000017120 possible_ortholog 1 retrogene
retro_btau_481,
Choloepus hoffmanni ENSCHOG00000007588 possible_ortholog 2 retrogenes
retro_chof_1159, retro_chof_2193,
Callithrix jacchus ENSCJAG00000007174 possible_ortholog 22 retrogenes
retro_cjac_1048, retro_cjac_1403, retro_cjac_1683, retro_cjac_1761, retro_cjac_1820, retro_cjac_2261, retro_cjac_2389, retro_cjac_2390, retro_cjac_2391, retro_cjac_2445, retro_cjac_2523, retro_cjac_2659, retro_cjac_2663, retro_cjac_2909, retro_cjac_4205, retro_cjac_570, retro_cjac_635, retro_cjac_662, retro_cjac_872, retro_cjac_937, retro_cjac_966, retro_cjac_980,
Erinaceus europaeus ENSEEUG00000006481 ortholog_one2many 3 retrogenes
retro_eeur_219, retro_eeur_285, retro_eeur_369,
Homo sapiens ENSG00000167085 ortholog_one2many 15 retrogenes
retro_hsap_1113, retro_hsap_1514, retro_hsap_161, retro_hsap_1640, retro_hsap_2170, retro_hsap_2692, retro_hsap_3534, retro_hsap_3750, retro_hsap_3868, retro_hsap_3869, retro_hsap_4186, retro_hsap_4888, retro_hsap_517, retro_hsap_617, retro_hsap_776,
Gorilla gorilla ENSGGOG00000028002 possible_ortholog 12 retrogenes
retro_ggor_124, retro_ggor_1722, retro_ggor_1876, retro_ggor_238, retro_ggor_2387, retro_ggor_246, retro_ggor_2607, retro_ggor_3053, retro_ggor_476, retro_ggor_643, retro_ggor_741, retro_ggor_870,
Macropus eugenii ENSMEUG00000005122 ortholog_one2many 1 retrogene
retro_meug_708,
Myotis lucifugus ENSMLUG00000008203 possible_ortholog 2 retrogenes
retro_mluc_116, retro_mluc_2190,
Macaca mulatta ENSMMUG00000000156 possible_ortholog 13 retrogenes
retro_mmul_1096, retro_mmul_1119, retro_mmul_1165, retro_mmul_1425, retro_mmul_151, retro_mmul_1565, retro_mmul_2148, retro_mmul_2420, retro_mmul_426, retro_mmul_521, retro_mmul_834, retro_mmul_866, retro_mmul_933,
Monodelphis domestica ENSMODG00000012210 ortholog_one2many 1 retrogene
retro_mdom_812,
Mus musculus ENSMUSG00000038845 possible_ortholog 8 retrogenes
retro_mmus_1089, retro_mmus_1321, retro_mmus_3522, retro_mmus_3530, retro_mmus_3535, retro_mmus_3649, retro_mmus_3657, retro_mmus_822,
Nomascus leucogenys ENSNLEG00000002978 possible_ortholog 13 retrogenes
retro_nleu_1190, retro_nleu_1254, retro_nleu_1326, retro_nleu_1557, retro_nleu_1755, retro_nleu_1796, retro_nleu_1874, retro_nleu_191, retro_nleu_195, retro_nleu_2547, retro_nleu_2573, retro_nleu_402, retro_nleu_444,
Otolemur garnettii ENSOGAG00000027015 possible_ortholog 1 retrogene
retro_ogar_968,
Procavia capensis ENSPCAG00000008851 ortholog_one2many 1 retrogene
retro_pcap_74,
Pongo abelii ENSPPYG00000008920 possible_ortholog 16 retrogenes
retro_pabe_1262, retro_pabe_1357, retro_pabe_1409, retro_pabe_1770, retro_pabe_2291, retro_pabe_289, retro_pabe_3030, retro_pabe_3034, retro_pabe_3426, retro_pabe_3427, retro_pabe_3800, retro_pabe_552, retro_pabe_753, retro_pabe_922, retro_pabe_925, retro_pabe_977,
Pan troglodytes ENSPTRG00000009376 ortholog_one2many 14 retrogenes
retro_ptro_1025, retro_ptro_1110, retro_ptro_154, retro_ptro_1656, retro_ptro_1817, retro_ptro_2401, retro_ptro_2545, retro_ptro_2841, retro_ptro_2964, retro_ptro_3256, retro_ptro_386, retro_ptro_451, retro_ptro_542, retro_ptro_686,
Rattus norvegicus ENSRNOG00000046799 possible_ortholog 18 retrogenes
retro_rnor_1058, retro_rnor_1416, retro_rnor_1540, retro_rnor_1542, retro_rnor_2398, retro_rnor_2399, retro_rnor_2610, retro_rnor_2653, retro_rnor_2815, retro_rnor_2826, retro_rnor_2848, retro_rnor_2855, retro_rnor_2909, retro_rnor_292, retro_rnor_2948, retro_rnor_2949, retro_rnor_543, retro_rnor_898,
Tupaia belangeri ENSTBEG00000010537 possible_ortholog 4 retrogenes
retro_tbel_1012, retro_tbel_2085, retro_tbel_264, retro_tbel_2949,
Tursiops truncatus ENSTTRG00000010836 possible_ortholog 1 retrogene
retro_ttru_639,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_202 92.28 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCAFG00000016926 retrocopies