RetrogeneDB ID:

retro_ggor_246

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:1:60915825..60916641(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PHB
Ensembl ID:ENSGGOG00000028002
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_246
ATGGCTGCCAAAGTGTTTGAGTCCATAGGCAAGTTTGGCCTGGTCTAAGCTGTTGCAGGAGGCGTGGTGAACTCTGCCTT
ATATAATGTGGACGCTGGGCACAGAGCTGTCATCCTTGACCGATTCCGTGGAGTACAGGAAATTGTGGTAGGGGAAGGGA
CTCACTTTCTCATCCTATGGGTACAGAAACCAGTTATCTTTGACTGCCATTCTTGACCACGTAATGTGTCAGTCATCACT
GGTAGCAAAGATTTACAGAATGTCAACATCGCATTGCACATCCCCTTCCAGCCCATCGCTAGCCAGCTTCCTCGCATCTT
CACCAGCATCGGAGAGGACTATGATGAGCGTGTGCTGCCATCCATCACAACTGAGATACTCAAGTCAGTGGTGGTTTGCT
TTGATGCTGGAGAACTAATCACCCAGAGAGAGCTGGTCTCCAGGCAGGCAAGCGACAACCTTACGGAGTGAGCAGCCACC
TTTAGGCTCATCCTGGACGACATGTCCTTGACATATCTGACCTTCAGGAAGGAGTTCACAGAAGCAGTGGGAGCCAAACA
GGTGGCTCAGCAGGAAGCAGAAAGGGCCAGATTTGTGATGGAAAAGGCTAAGCAGCATAAAAAGGCAGCCATCATCTCTG
CTGAGGGTGACTCCAAGGCAGCTGAGCTGATTGCCAACTCACTGGCCACTGCAGGGGACGGCCTGATCGAGCTGCGCAAG
CTGTAAGCTGCGGAGGACATCGCGTACCAGCTCTCACGCTCTCAGAACATCACCTACCTGCCGGCGGGGCAGTCCGTGCT
CCTCTAGCTGCCCCAG

ORF - retro_ggor_246 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.97 %
Parental protein coverage: 100. %
Number of stop codons detected: 5
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCR
MAAKVFESIGKFGL..AVAGGVVNSALYNVDAGHRAVI.DRFRGVQ.IVVGEGTHFLI.WVQKP.IFDC.
RetrocopyMAAKVFESIGKFGLV*AVAGGVVNSALYNVDAGHRAVILDRFRGVQEIVVGEGTHFLILWVQKPVIFDCH
ParentalSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELI
S.PRNV.VITGSKDLQNVNI.L.I.F.P.ASQLPRIFTSIGEDYDERVLPSITTEILKSVV..FDAGELI
RetrocopyS*PRNVSVITGSKDLQNVNIALHIPFQPIASQLPRIFTSIGEDYDERVLPSITTEILKSVVVCFDAGELI
ParentalTQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAA
TQRELVSRQ.SD.LTE.AATF.LILDD.SLT.LTF.KEFTEAV.AKQVAQQEAERARFV.EKA.Q.KKAA
RetrocopyTQRELVSRQASDNLTE*AATFRLILDDMSLTYLTFRKEFTEAVGAKQVAQQEAERARFVMEKAKQHKKAA
ParentalIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPAGQSVLLQLPQ
IISAEGDSKAAELIANSLATAGDGLIELRKL.AAEDIAYQLSRS.NITYLPAGQSVLL.LPQ
RetrocopyIISAEGDSKAAELIANSLATAGDGLIELRKL*AAEDIAYQLSRSQNITYLPAGQSVLL*LPQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .10 RPM 90 .20 RPM
SRP007412_cerebellum 0 .04 RPM 56 .06 RPM
SRP007412_heart 0 .03 RPM 85 .96 RPM
SRP007412_kidney 0 .04 RPM 311 .98 RPM
SRP007412_liver 0 .00 RPM 94 .01 RPM
SRP007412_testis 0 .00 RPM 61 .12 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_246 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_246 has 2 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_161
Pan troglodytes retro_ptro_154

Parental genes homology:
Parental genes homology involve 26 parental genes, and 165 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000047971 retrocopy
Ailuropoda melanoleuca ENSAMEG000000123641 retrocopy
Bos taurus ENSBTAG000000171201 retrocopy
Canis familiaris ENSCAFG000000169261 retrocopy
Choloepus hoffmanni ENSCHOG000000075882 retrocopies
Callithrix jacchus ENSCJAG0000000717422 retrocopies
Erinaceus europaeus ENSEEUG000000064813 retrocopies
Homo sapiens ENSG0000016708515 retrocopies
Gorilla gorilla ENSGGOG00000028002 12 retrocopies
Macropus eugenii ENSMEUG000000051221 retrocopy
Microcebus murinus ENSMICG000000069669 retrocopies
Myotis lucifugus ENSMLUG000000082032 retrocopies
Macaca mulatta ENSMMUG0000000015613 retrocopies
Monodelphis domestica ENSMODG000000122101 retrocopy
Mus musculus ENSMUSG000000388458 retrocopies
Nomascus leucogenys ENSNLEG0000000297813 retrocopies
Oryctolagus cuniculus ENSOCUG000000072091 retrocopy
Otolemur garnettii ENSOGAG000000270151 retrocopy
Ochotona princeps ENSOPRG000000008682 retrocopies
Procavia capensis ENSPCAG000000088511 retrocopy
Pongo abelii ENSPPYG0000000892016 retrocopies
Pan troglodytes ENSPTRG0000000937614 retrocopies
Rattus norvegicus ENSRNOG0000004679918 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000199292 retrocopies
Tupaia belangeri ENSTBEG000000105374 retrocopies
Tursiops truncatus ENSTTRG000000108361 retrocopy



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