RetrogeneDB ID: | retro_ggor_238 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:52431390..52431826(+) | ||
Located in intron of: | ENSGGOG00000013273 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHB | ||
Ensembl ID: | ENSGGOG00000028002 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 57.53 % |
Parental protein coverage: | 62.78 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | VDAGHRAVIFDDS-GVQDIVVGEGTHFLIPWVQKPILC--RSRPRNVPVITSKD-LQNVNITLRILFRPV |
VDAG.RA.IFD.S.G.....V..GTHFLIPWV.KP......S.P.N.P.IT...........L.ILF.PV | |
Retrocopy | VDAGYRAIIFDRSHGAHTTLVETGTHFLIPWVRKPVIFDFHS*PHNMPIITGSK>IYRMSV*LHILFQPV |
Parental | ASQLPRIFTSIGEDYDERVLPSITTEILKSVVVRFDAGELITQRELVSRQVSDDLTE--ITLPHLVLTLS |
.SQLP.IF.SI.EDYDE.VLP.I.TEILKSVV...DAGE.IT.RELVS.QVSD.LTE...T........S | |
Retrocopy | SSQLPHIFISIREDYDEHVLPPIITEILKSVVTCSDAGEQITPRELVSTQVSDGLTE*AATFGFILDNVS |
Parental | PTHLTF |
..HLTF | |
Retrocopy | LMHLTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .34 RPM | 90 .20 RPM |
SRP007412_cerebellum | 0 .71 RPM | 56 .06 RPM |
SRP007412_heart | 0 .00 RPM | 85 .96 RPM |
SRP007412_kidney | 0 .20 RPM | 311 .98 RPM |
SRP007412_liver | 0 .18 RPM | 94 .01 RPM |
SRP007412_testis | 0 .21 RPM | 61 .12 RPM |