RetrogeneDB ID:

retro_ggor_124

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:9:67837491..67838310(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSGGOG00000027823
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:PHB
Ensembl ID:ENSGGOG00000028002
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_124
ATGGCTGCCAAAATGTATGAGTTCATCGGCAAGTTTGGCCTGGCCTTAGTTGTTGCAGGAGGCGTGGTGAACTCTGCCTT
ATATAGTGTGGATGCTGGGCACAGAGCTGTCGTCTTTGACCGATTCCGTGGAGTACAGGACATTGTGGTAGGCAAAGGGA
CTCACTATCTCATCCCATGGTTACAGAAATCAACGATCTTTGACTGCCGTTCTCAACCACGTAATGTGCCAGTCATCACC
GGTAGCAAAGATTTACAGAATGTCAACCTCACACTGCGCATCATCTTCCGGCCCGTCGCTAGCCAGTTTCCTCACATCTT
CACCAGCATCGGAGAGGACCGTGATGAGCGTGTGCCGCCGTCCATCATGAACAAGATCCTCAAGTCAGTGGTGGCTCGCT
TTGAAGCTGGAGAACTAATCACCCAGAGAGAGCAGATCTCCAGGCAGGTGAGCGATGACCTTACGGAGCCAGCAGCCACC
TTTGGGCTCATTCTGGACGACGTGTCCTTGACATATCTGACCCTCGGGAAGGAGTTCATAGAAGCGGCGGAAGCCAAACA
GATAGCTCAGCAGGAAGCAGAGAGGGCCAGATTTGTGGTGGAAAAGGCTGAGCAGCAGAAAAAGGCGGCCATCATCTCTG
CTGAGGGCGACTCCAAGGTGGCCGAGCTGATCACCAACTCACTGGCCACAGCAGGGGACGCCCTGATCGAGCTGCGCAAG
CTGGAAGCTGTGGAGGACATCACCTACCAGCTTTTACGCTCTCGGAACATCACCTACCTGCGGGCAGGGCAGTCCATGCC
CCTGCAGCTGCCCTGGTGA

ORF - retro_ggor_124 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.61 %
Parental protein coverage: 99.63 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCR
MAAK..E.IGKFGLAL.VAGGVVNSALY.VDAGHRAV.FDRFRGVQDIVVG.GTH.LIPW.QK..IFDCR
RetrocopyMAAKMYEFIGKFGLALVVAGGVVNSALYSVDAGHRAVVFDRFRGVQDIVVGKGTHYLIPWLQKSTIFDCR
ParentalSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELI
S.PRNVPVITGSKDLQNVN.TLRI.FRPVASQ.P.IFTSIGED.DERV.PSI...ILKSVVARF.AGELI
RetrocopySQPRNVPVITGSKDLQNVNLTLRIIFRPVASQFPHIFTSIGEDRDERVPPSIMNKILKSVVARFEAGELI
ParentalTQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAA
TQRE..SRQVSDDLTE.AATFGLILDDVSLT.LT.GKEF.EA.EAKQ.AQQEAERARFVVEKAEQQKKAA
RetrocopyTQREQISRQVSDDLTEPAATFGLILDDVSLTYLTLGKEFIEAAEAKQIAQQEAERARFVVEKAEQQKKAA
ParentalIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPAGQSVLLQLP
IISAEGDSK.AELI.NSLATAGD.LIELRKLEA.EDI.YQL.RSRNITYL.AGQS..LQLP
RetrocopyIISAEGDSKVAELITNSLATAGDALIELRKLEAVEDITYQLLRSRNITYLRAGQSMPLQLP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .10 RPM 90 .20 RPM
SRP007412_cerebellum 0 .28 RPM 56 .06 RPM
SRP007412_heart 0 .09 RPM 85 .96 RPM
SRP007412_kidney 0 .20 RPM 311 .98 RPM
SRP007412_liver 0 .00 RPM 94 .01 RPM
SRP007412_testis 0 .62 RPM 61 .12 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_124 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_124 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 26 parental genes, and 165 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000047971 retrocopy
Ailuropoda melanoleuca ENSAMEG000000123641 retrocopy
Bos taurus ENSBTAG000000171201 retrocopy
Canis familiaris ENSCAFG000000169261 retrocopy
Choloepus hoffmanni ENSCHOG000000075882 retrocopies
Callithrix jacchus ENSCJAG0000000717422 retrocopies
Erinaceus europaeus ENSEEUG000000064813 retrocopies
Homo sapiens ENSG0000016708515 retrocopies
Gorilla gorilla ENSGGOG00000028002 12 retrocopies
Macropus eugenii ENSMEUG000000051221 retrocopy
Microcebus murinus ENSMICG000000069669 retrocopies
Myotis lucifugus ENSMLUG000000082032 retrocopies
Macaca mulatta ENSMMUG0000000015613 retrocopies
Monodelphis domestica ENSMODG000000122101 retrocopy
Mus musculus ENSMUSG000000388458 retrocopies
Nomascus leucogenys ENSNLEG0000000297813 retrocopies
Oryctolagus cuniculus ENSOCUG000000072091 retrocopy
Otolemur garnettii ENSOGAG000000270151 retrocopy
Ochotona princeps ENSOPRG000000008682 retrocopies
Procavia capensis ENSPCAG000000088511 retrocopy
Pongo abelii ENSPPYG0000000892016 retrocopies
Pan troglodytes ENSPTRG0000000937614 retrocopies
Rattus norvegicus ENSRNOG0000004679918 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000199292 retrocopies
Tupaia belangeri ENSTBEG000000105374 retrocopies
Tursiops truncatus ENSTTRG000000108361 retrocopy



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