RetrogeneDB ID: | retro_rnor_2815 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:69455322..69456019(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000038099 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Phb | ||
Ensembl ID: | ENSRNOG00000046799 | ||
Aliases: | None | ||
Description: | Prohibitin [Source:UniProtKB/Swiss-Prot;Acc:P67779] |
Percent Identity: | 87.12 % |
Parental protein coverage: | 85.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPI-IFDCRSRPRNVPVITGSKDLQ |
VAG.VVNSALYNVDAGHRAVIFD.F.G.QDIVV.EGTHFLIPWVQKPI.IFD..SRPRNV.VITGSKDLQ | |
Retrocopy | VAGSVVNSALYNVDAGHRAVIFDQFCGLQDIVVEEGTHFLIPWVQKPI>IFDSHSRPRNVSVITGSKDLQ |
Parental | NVNITLRILFRPVASQLPRIYTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTE |
NV.ITL.ILFRPVASQLP.IYTSIG.DY.E.VLPSITTEILKSVVARFDAGELITQ..LVSRQVS.DL.E | |
Retrocopy | NVRITLCILFRPVASQLPCIYTSIGQDYYEWVLPSITTEILKSVVARFDAGELITQGALVSRQVSHDLME |
Parental | RAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIAN |
.AATF.LILDDVSLTHLTF.KEFTEAVEAKQVAQQEAE.ARFVVEKAEQQKK.AIIS.EG.SK.A.LIAN | |
Retrocopy | PAATFRLILDDVSLTHLTFWKEFTEAVEAKQVAQQEAEKARFVVEKAEQQKKVAIISVEGNSKVAKLIAN |
Parental | SLATAGDGLIELRKLEAAEDIAY |
SLATAGDGL.ELRKL.AAEDIAY | |
Retrocopy | SLATAGDGLMELRKLQAAEDIAY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 26 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 63 .85 RPM |
SRP017611_liver | 0 .00 RPM | 44 .85 RPM |