RetrogeneDB ID: | retro_eeur_219 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_212188:5300..5909(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHB | ||
Ensembl ID: | ENSEEUG00000006481 | ||
Aliases: | None | ||
Description: | prohibitin [Source:HGNC Symbol;Acc:8912] |
Percent Identity: | 95.59 % |
Parental protein coverage: | 75. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | CRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGE |
CRS.PRNV.VITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGE | |
Retrocopy | CRSWPRNVLVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGE |
Parental | LITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKK |
LITQRELV.RQVSDDLTE..ATFGLILDDVSLTHLTFGKEFTEAVEAKQV.QQEAERARFVVEKAEQQ.K | |
Retrocopy | LITQRELVFRQVSDDLTE*VATFGLILDDVSLTHLTFGKEFTEAVEAKQVTQQEAERARFVVEKAEQQ-K |
Parental | AAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPSGQSVLLQLPQ |
AAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLS.SRNITYLPS.QSVLLQLPQ | |
Retrocopy | AAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSHSRNITYLPSRQSVLLQLPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .29 RPM | 26 .11 RPM |
SRP017611_kidney | 3 .56 RPM | 112 .90 RPM |
SRP017611_liver | 1 .13 RPM | 44 .53 RPM |