RetrogeneDB ID: | retro_tbel_2085 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_935:174264..174774(+) | ||
Located in intron of: | ENSTBEG00000002784 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHB | ||
Ensembl ID: | ENSTBEG00000010537 | ||
Aliases: | None | ||
Description: | prohibitin [Source:HGNC Symbol;Acc:8912] |
Percent Identity: | 88.37 % |
Parental protein coverage: | 62.5 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFL-IPWVQKPIIFDC |
M.AKVFESIGKF.LALAVAGGVVNSALYNVD.GHRAVIFD.FRGVQDIVV.EGTHFL.IPWVQKPIIFDC | |
Retrocopy | MVAKVFESIGKFHLALAVAGGVVNSALYNVDSGHRAVIFD*FRGVQDIVVKEGTHFL>IPWVQKPIIFDC |
Parental | RSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFD-AGE |
.S.....PVITGSKDLQNVNI.LR.LFRP.ASQLPRIFTSIGEDYDE.VLPSITTEILKS.VARFD..GE | |
Retrocopy | HSWLCIMPVITGSKDLQNVNIMLRNLFRPMASQLPRIFTSIGEDYDEHVLPSITTEILKSMVARFD<CGE |
Parental | LITQRELVSRQVSDDLTERAATFGLILDDVSL |
LITQRELVSRQVSDDLTERAAT.GLILDDVSL | |
Retrocopy | LITQRELVSRQVSDDLTERAATIGLILDDVSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |