RetrogeneDB ID: | retro_tbel_2721 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_117514:895..1362(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC42 | ||
Ensembl ID: | ENSTBEG00000002614 | ||
Aliases: | None | ||
Description: | cell division cycle 42 [Source:HGNC Symbol;Acc:1736] |
Percent Identity: | 90.45 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC |
VFDNYAVTVM.GGEPYTL.LFDTAGQEDYDRLR.LSYP.TDVFLVCFSVVS.SSFENVKEKWV.EITHHC | |
Retrocopy | VFDNYAVTVMTGGEPYTLRLFDTAGQEDYDRLRLLSYP*TDVFLVCFSVVSLSSFENVKEKWVSEITHHC |
Parental | PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD-EAIL |
PKTPFLLVGTQ.DLRDDPSTIEKLAKNKQKP.TPETAEKLA.DLKAVKYVECSALT.KGLKNVF..EAIL | |
Retrocopy | PKTPFLLVGTQTDLRDDPSTIEKLAKNKQKPMTPETAEKLAHDLKAVKYVECSALTHKGLKNVFE<EAIL |
Parental | AALEPPEPKKSRRCVLL |
A.LEPPEPKKS.R.VLL | |
Retrocopy | ATLEPPEPKKSCRSVLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014707 | 5 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000005306 | 10 retrocopies | |
Callithrix jacchus | ENSCJAG00000005912 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000006543 | 4 retrocopies | |
Equus caballus | ENSECAG00000019180 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004443 | 1 retrocopy | |
Felis catus | ENSFCAG00000004853 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000016078 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000015999 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000009986 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014261 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005184 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000002614 | 17 retrocopies | |
Tupaia belangeri | ENSTBEG00000007272 | 4 retrocopies |