RetrogeneDB ID: | retro_cfam_2189 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:84122861..84123340(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000018128 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC42 | ||
Ensembl ID: | ENSCAFG00000014707 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris cell division cycle 42 (GTP binding protein, 25kDa) (CDC42), mRNA. [Source:RefSeq mRNA;Acc:NM_001003254] |
Percent Identity: | 85.19 % |
Parental protein coverage: | 83.77 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | YVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI |
YVPTVFD.YAVTVMIG.EPYTLGLFDTAGQEDYDRLR.LSYPQTDVFLVCFSVVSPSSFENVKEK.VPEI | |
Retrocopy | YVPTVFDKYAVTVMIGREPYTLGLFDTAGQEDYDRLRLLSYPQTDVFLVCFSVVSPSSFENVKEKGVPEI |
Parental | THHCPKTPF-LLVGTQI-DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF |
THHCPK.....L.G....DLRDDP.TIEKLAKNKQKPITPETAEKLA.DLKAVKYV.C.ALTQKGLKNVF | |
Retrocopy | THHCPKRLLSCLLGPKL<DLRDDPYTIEKLAKNKQKPITPETAEKLAHDLKAVKYVDCFALTQKGLKNVF |
Parental | DEAILAALEPPEPKKSRRCVLL |
.EAIL..LEPPE.KKS.RC.LL | |
Retrocopy | HEAIL-VLEPPELKKSLRCALL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 39 .65 RPM |
SRP017611_brain | 0 .00 RPM | 32 .15 RPM |
SRP017611_kidney | 0 .00 RPM | 27 .67 RPM |
SRP017611_liver | 0 .00 RPM | 5 .80 RPM |