RetrogeneDB ID: | retro_cfam_88 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 30:33110990..33111566(-) | ||
Located in intron of: | ENSCAFG00000017520 | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000017518 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC42 | ||
Ensembl ID: | ENSCAFG00000014707 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris cell division cycle 42 (GTP binding protein, 25kDa) (CDC42), mRNA. [Source:RefSeq mRNA;Acc:NM_001003254] |
Percent Identity: | 92.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL |
MQT..C.VVGDGA.GKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP.TLGL.DTAGQEDYDRL..L | |
Retrocopy | MQTTECIVVGDGAIGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPHTLGLSDTAGQEDYDRLQLL |
Parental | SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPE |
SYPQTDVF.VCFSV.SPSSFENVKEKWVPEITHHCPKTPFLLV.TQIDLRDDPSTIEK.AKNKQKPITPE | |
Retrocopy | SYPQTDVFRVCFSVFSPSSFENVKEKWVPEITHHCPKTPFLLVRTQIDLRDDPSTIEKPAKNKQKPITPE |
Parental | TAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL |
TAEKLA.DLKAVKYVECSALT.KGLKNVFDE.ILAALEPPEPKKSRRCVLL | |
Retrocopy | TAEKLACDLKAVKYVECSALTEKGLKNVFDEGILAALEPPEPKKSRRCVLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .13 RPM | 39 .65 RPM |
SRP017611_brain | 0 .00 RPM | 32 .15 RPM |
SRP017611_kidney | 0 .20 RPM | 27 .67 RPM |
SRP017611_liver | 0 .00 RPM | 5 .80 RPM |