RetrogeneDB ID: | retro_tbel_4427 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_82848:5165..5552(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC42 | ||
Ensembl ID: | ENSTBEG00000002614 | ||
Aliases: | None | ||
Description: | cell division cycle 42 [Source:HGNC Symbol;Acc:1736] |
Percent Identity: | 77.1 % |
Parental protein coverage: | 82.69 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | EDYDRLRPLSY-PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLA |
.DYD.L..LSY.P.T.VFL.CF.VVSPSSFENVKEK.VP.ITHHC.KT.FLLVG.QIDLRDDPST.EKL. | |
Retrocopy | KDYDIL*QLSY>PITYVFLICFTVVSPSSFENVKEK*VPDITHHCQKTLFLLVGIQIDLRDDPSTTEKLW |
Parental | KNKQKPITP-ETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVL |
......ITP..TAEKLA.DLKAVKYV.C.ALTQKG..NVFDEAILAALEPPEPKKS.RCVL | |
Retrocopy | QEQTETITP<KTAEKLASDLKAVKYVDCCALTQKGINNVFDEAILAALEPPEPKKSCRCVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014707 | 5 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000005306 | 10 retrocopies | |
Callithrix jacchus | ENSCJAG00000005912 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000006543 | 4 retrocopies | |
Equus caballus | ENSECAG00000019180 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004443 | 1 retrocopy | |
Felis catus | ENSFCAG00000004853 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000016078 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000015999 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000009986 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014261 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005184 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000002614 | 17 retrocopies | |
Tupaia belangeri | ENSTBEG00000007272 | 4 retrocopies |