RetrogeneDB ID: | retro_cfam_1970 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 9:9038383..9038851(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC42 | ||
Ensembl ID: | ENSCAFG00000014707 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris cell division cycle 42 (GTP binding protein, 25kDa) (CDC42), mRNA. [Source:RefSeq mRNA;Acc:NM_001003254] |
Percent Identity: | 67.27 % |
Parental protein coverage: | 83.25 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | VPTVFDNYAVTVMIGGEP-YTLGLFDTAG-QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE-NVKEKWVP |
V.TVFD.YAVTV...GE...TLGL.DTAG.QEDYDR..PLS.P..DV.LVCFSVVSPSSFE.N.KEKWVP | |
Retrocopy | VLTVFDIYAVTVLT-GEE>HTLGLSDTAG<QEDYDRV*PLSCPKPDVYLVCFSVVSPSSFE>NMKEKWVP |
Parental | EITHHCPKTPFLLVGTQIDLRDD-PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNV |
EI.HHCPKT.F.LVG.QIDLRDD.P.....L.....K..T..T.EKLA.DLK.V..V.CSALTQKGLKNV | |
Retrocopy | EIAHHCPKTLFVLVGIQIDLRDD>PL*LRNLPRTN-KSVTTKTVEKLAHDLKVVRFVQCSALTQKGLKNV |
Parental | FDEAILAA-LEPPE-PKKSRRCVLL |
FD.A.L.A.LEPP..P....RC.LL | |
Retrocopy | FDKATLTA<LEPPD<PR-NYRCTLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 39 .65 RPM |
SRP017611_brain | 0 .08 RPM | 32 .15 RPM |
SRP017611_kidney | 0 .00 RPM | 27 .67 RPM |
SRP017611_liver | 0 .00 RPM | 5 .80 RPM |