RetrogeneDB ID: | retro_cfam_89 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 28:7333594..7334176(-) | ||
Located in intron of: | ENSCAFG00000007534 | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000007554 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC42 | ||
Ensembl ID: | ENSCAFG00000014707 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris cell division cycle 42 (GTP binding protein, 25kDa) (CDC42), mRNA. [Source:RefSeq mRNA;Acc:NM_001003254] |
Percent Identity: | 97.41 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL |
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEY.PTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL | |
Retrocopy | MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYMPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL |
Parental | SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT |
SYPQTDVFLVCFSVVSPSS.ENVKEKWVPEITHHC..PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT | |
Retrocopy | SYPQTDVFLVCFSVVSPSSYENVKEKWVPEITHHCQKPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT |
Parental | PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL |
PETAEKLARDLKAVKYV.CSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL | |
Retrocopy | PETAEKLARDLKAVKYVKCSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 2 .31 RPM | 39 .65 RPM |
SRP017611_brain | 0 .95 RPM | 32 .15 RPM |
SRP017611_kidney | 1 .58 RPM | 27 .67 RPM |
SRP017611_liver | 0 .36 RPM | 5 .80 RPM |