RetrogeneDB ID: | retro_mdom_537 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 1:214266350..214266715(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC42 | ||
Ensembl ID: | ENSMODG00000016078 | ||
Aliases: | None | ||
Description: | cell division cycle 42 [Source:HGNC Symbol;Acc:1736] |
Percent Identity: | 86.99 % |
Parental protein coverage: | 63.87 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL-VGTQIDLRDDPSTIEKLAKNKQKPIT |
L.YPQTDVFLV.FSVVSPSSFEN.KEKWVPE.THHCPKTPFLL.VGTQIDLRDDPSTI.KLAKNKQKPIT | |
Retrocopy | LNYPQTDVFLV*FSVVSPSSFENIKEKWVPENTHHCPKTPFLL<VGTQIDLRDDPSTIKKLAKNKQKPIT |
Parental | PETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL |
PETAEKLAR.LKAVKYVE.S.LTQKGLK..FDEAI..ALEPPEPKK..RC.LL | |
Retrocopy | PETAEKLARHLKAVKYVEWSTLTQKGLKYAFDEAIPTALEPPEPKKNPRCELL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |